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3 protocols using ab122897

1

Investigating UPR Pathway Regulation

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Antibodies against GRP78 (ab21685), ATF6 (ab122897), p-PERK (ab192591) and p-eIF2α (Ser51) (ab32157) were obtained from Abcam (Cambridge, UK). Antibodies against total PERK (sc-13073) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against p-IRE1 (S724) (CY5605), eIF2α (AB3335), and β-actin (AB0061) were purchased from Abways Technology (Shanghai, China). Antibodies against total IRE1 (3294S) were purchased from Cell Signaling Technology (Danvers, MA, USA). Thapsigargin (Tg) (Abcam, ab120286), GSK2606414 (HY-18072) (MedChem Express, Monmouth Junction, NJ, USA), APY29 (HY-17537) (MedChem Express, Monmouth Junction, NJ, USA) and 4μ8C (HY-19707) (MedChem Express, Monmouth Junction, NJ, USA) were dissolved in DMSO.
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2

Western Blot Analysis of Hepatic Lipid Metabolism

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Mouse liver tissues were homogenized in RIPA buffer with protease and phosphatase inhibitors (Bimake, Houston, USA). The protein concentration was determined using a BCA Protein Quantitative Assay Kit (Shenergy Biocolor Bioscience & Technology Co., Shanghai, China). Total protein was mixed with SDS loading buffer and subjected to SDS-PAGE on a 10% gel. Proteins were electrotransferred onto PVDF membranes (Millipore) and the blots were probed with the following primary antibodies overnight at 4 °C: anti-FASN (cst3180, Cell Signaling Technology, USA), anti-SREBP1C (ab3259, Abcam, USA), anti-SCD1 (ab19862, Abcam), anti-CPT1α (ab176320, Abcam), anti-MTP (sc-135994, Santa Cruz Biotechnology, USA), anti-CD36 (18836-i-ap, Proteintech, China), anti-FGF21 (ab171941, Abcam), anti-BIP (11587-1-ap, Proteintech), anti-p-IRE (ab48187, Abcam), anti-IRE (ab37073, Abcam), anti-eIF2α (cst9722, Cell Signaling Technology), anti-p-eIF2α (cst3597, Cell Signaling Technology), anti-ATF4 (10835-1-ap, Proteintech), anti-ATF6 (ab122897, Abcam), anti-p-PERK (sc-32577, Santa Cruz Biotechnology), anti-PERK (ab65142, Abcam) and anti-GAPDH (60,004–1, Proteintech). Appropriate secondary antibodies conjugated to horseradish peroxidase (Amersham) were diluted 1:5000 used. The bound primary antibodies were visualized using the Alpha Q detection system.
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3

Quantitative Phosphorylation Analysis of ATF6 and SIK1

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Confluent HEK293T (ATCC CRL-3216) cells were transfected with 2 μg plasmids encoding 3× Flag-tagged ATF6 (11975, Addgene) or Myc-DDK-tagged SIK1 (RC206169, OriGene) using DharmaFECT 1 (T-2001–01, Horizon Discovery), treated the next day with DMSO or 1 μM HG for 6 h, lysed using 1,000 μl Pierce IP Lysis buffer (87787, Thermo Fisher Scientific) and collected by centrifugation (5 min at 1,000g). Samples were incubated with 2 μl anti-Flag antibody (F7425, Sigma-Aldrich) on a rotator at 4 °C overnight, followed by an incubation with prewashed Protein A/G Magnetic beads (88803, Thermo Fisher Scientific) on the rotator at room temperature for 1 h. After washing five times in washing buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM MgCl2, 0.5% (vol/vol) Nonidet P-40 and protease inhibitors), samples were eluted with Laemmli buffer and analysed by immunoblot. Primary antibodies used for immunoblotting were anti-phosphoserine/threonine (1:1,000, PM3801, ECM Biosciences), anti-Flag (1:1,000, F1804, Sigma-Aldrich) and anti-ATF6 (1:1,000, ab122897, Abcam).
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