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6 protocols using cd3e apc cy7

1

Multiparameter Flow Cytometry Analysis

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Cell suspensions were treated with anti CD16/CD32 (2.4G2) and then surface stained with combinations of the following fluorochrome-conjugated antibodies: From Biolegend: CD3e–FITC (clone: 145 2C11), Ly6C–FITC or APC/Cy7 (clone: HK1.4), Ly6G–PE/Cy7 (clone: 1A8), CD3e–APC/Cy7 (clone: 145 2C11), CD45R/B220–Pacific Blue (clone: RA3 6B2), CCR2-AlexaFluor647 (clone: SA203G11), CX3CR1-APC (clone: SA011F11), IgG2A,κ-APC isotype control; from BD Biosciences: NK1.1–PerCP/Cy5.5 (clone: PK136); from Ebiosciences: F4/80–APC (clone: BM8), CD4 (L3T4)–FITC (clone: RM4 5), CD11b–FITC (clone: M1/70), CD11b–PE (clone: M1/70), CD4–APC (clone: GK1.5). Cells were acquired on FACSCanto or AriaIII flow cytometers using FACSDiVa software, and data were analyzed using FlowJo software (Tree Star).
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2

Comprehensive Immune Cell Profiling

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Monoclonal antibodies CD3e-ApcCy7, CD45-PerCPCy5.5, Gr1-APC, CD8-PECy7, CD25-FITC, CD11b-FITC, CD11C-PE, B220-PB, and NK1.1-PE were purchased from BD Biosciences. Foxp3-APC and F4/80-PE were purchased from eBioscience and CD4-PO and calcein violet from Invitrogen.
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3

Flow Cytometry Analysis of Immune Cells After BMT

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For flow cytometry analyses at day +17 after BMT, peripheral blood, spleen and lymph nodes were harvested as described previously. [16 ] Single cell suspensions were stained with rat anti-mouse antibodies from BD Biosciences as follows: CD3e-APC-Cy7 (1:100), CD4-PE-Cy7 (1:800), CD8a-APC (1:200), CD25-PerCP-Cy5.5(1:200), CD11b-APC-Cy7 (1:400), B220-PerCP-Cy5.5 (1:100) or Nk1.1-PerCP-Cy5.5 (1:200). For chimerism analysis of blood and BM, antibodies against PE- Ly9.1 (1:100) and FITC-H2kb (1:50) were used. Regulatory T cell staining in blood and spleen were performed using Anti-Mouse/Rat FoxP3 Staining Set APC (eBioscience, San Diego, CA, USA) following the manufacturer´s instructions. Samples were analyzed by BD FACS Canto II (BD Biosciences) and FlowJo 7.6.5 Software (TreeStar Inc., Ashland, OR, USA).
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4

Multiparameter Flow Cytometry Analysis

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Cell suspensions were treated with anti CD16/CD32 (2.4G2) and then surface stained with combinations of the following fluorochrome-conjugated antibodies: From Biolegend: CD3e–FITC (clone: 145 2C11), Ly6C–FITC or APC/Cy7 (clone: HK1.4), Ly6G–PE/Cy7 (clone: 1A8), CD3e–APC/Cy7 (clone: 145 2C11), CD45R/B220–Pacific Blue (clone: RA3 6B2), CCR2-AlexaFluor647 (clone: SA203G11), CX3CR1-APC (clone: SA011F11), IgG2A,κ-APC isotype control; from BD Biosciences: NK1.1–PerCP/Cy5.5 (clone: PK136); from Ebiosciences: F4/80–APC (clone: BM8), CD4 (L3T4)–FITC (clone: RM4 5), CD11b–FITC (clone: M1/70), CD11b–PE (clone: M1/70), CD4–APC (clone: GK1.5). Cells were acquired on FACSCanto or AriaIII flow cytometers using FACSDiVa software, and data were analyzed using FlowJo software (Tree Star).
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5

Spleen Single Cell Isolation and Intracellular Cytokine Staining

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During necropsy spleens were collected in Iscove’s Dulbecco’s Medium (IMDM, Lonza) supplemented with 5% FBS and P/S/G for direct preparation of single cell suspensions using 100 µm strainers (Falcon). Erythrocytes were removed from single cell suspensions by treatment with red blood cell lysis buffer (Roche diagnostics). For intracellular cytokine staining, splenocytes were stimulated with 5 µM synthetic peptide (epitope NP366–374: ASNENVEIM [Fig. S2] or ASNEMMETM [Fig. 4]) or 1 µg/250,000 cells recombinant HA protein from H5N1 influenza virus A/Vietnam/1203/04 or A/Indonesia/5/05 (Protein Sciences) in IMDM supplemented with GolgiStop and incubated for 6 h at 37 °C. Mock-treated splenocytes and splenocytes stimulated with 50 ng/ml PMA (Sigma-Aldrich) and 0.5 µg/ml ionomycin (Sigma-Aldrich) served as appropriate negative and positive controls. After stimulation, splenocytes were incubated with fluorochrome-labeled antibodies to CD3eAPC-Cy7 (BD Pharmingen), CD8bFITC (BD Pharmingen), CD4PerCP (BD Pharmingen) and viable cells were identified with Aqua LIVE/DEAD (Invitrogen). Subsequently, cells were fixed and permeabilized using BD Cytofix/CytopermTM Plus (BD Biosciences), and incubated with anti-IFN-γPacificBlue (Biolegend). Samples were acquired on a FACS Canto II and data was analyzed as described previously55 (link),59 using FACS Diva software (BD Biosciences).
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6

Multiparametric Flow Cytometry Analysis

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Single‐cell suspensions were obtained from cultured cells or tumor tissues. The tumors were enzymatically digested in 1 mg mL−1 collagenase I and 1 mg mL−1 collagenase IV. Fixable Viability Stain 700 (564997, BD) was used to exclude dead cells. The following antibodies were used for surface staining: CD3e‐APC‐Cy™7 (557596, BD), CD8a‐PerCP‐Cy™5.5 (551162, BD), CD335‐BV421 (562850, BD), CD11b‐FITC (557396, BD), CD80‐APC (ab95549, Abcam), CD86‐PerCP‐Cy5.5 (105027, Biolegend), Gr‐1‐APC (108411, Biolegend) and CD11c‐FITC (117306, Biolegend). After being stained at room temperature in the dark, the cells were fixed with 4% methanol, permeabilized with 0.5% Triton, and intracellularly stained with Foxp3‐Alexa Fluor 647 (560401, BD). A BD FACSymphony A5 instrument was utilized for flow cytometry, and NovoExpress Software (Tree Star) was employed to analyze the data. Cell populations were identified as follows: CD4+ T cells: live/CD45+/CD3+/CD4+/FoxP3; CD8+ T cells: live/CD45+/CD3+/CD8+; Treg cells: live/CD45+/CD3+/CD4+/FoxP3+; natural killer (NK) cells: live/CD45+/CD3/NKP46+; MDSC cells: live/ CD11b+/Gr1+ and DCs: live/CD45+/CD3/CD11c+.
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