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Taqman mirna assay system

Manufactured by Thermo Fisher Scientific
Sourced in United States, China

The TaqMan miRNA assay system is a molecular biology tool designed for the detection and quantification of microRNA (miRNA) molecules. It utilizes real-time PCR technology to accurately measure the expression levels of specific miRNA targets.

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17 protocols using taqman mirna assay system

1

Quantifying miRNA Expression in Liver Tissues

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Total RNA was purified from liver tissues or cells using TRIzol reagent (Invitrogen, Carlsbad, CA, United States). The Transcriptor First Strand cDNA Synthesis Kit (Roche, Indianapolis, IN, United States) was used to perform reverse transcription. TaqMan miRNA assay system (Life Technologies Corporation, Shanghai, China) was used to detected the levels of U6 and miR-98. Gene expression was measured by qRT-PCR using SYBR green (Life Technologies, Grand Island, NY, United States). Results were normalized to β-actin expression and miR-98 to U6 snRNA, respectively. The primers used in this study were shown in Supplementary Table S1.
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2

Quantifying mRNA and miRNA Expression

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Total RNA was isolated from LX-2 cells, mouse liver tissues, and clinical samples using TRIzol reagent according to the manufacturer’s protocol. To quantify mRNA expression, total RNA was reverse transcribed into cDNA using the PrimeScript RT reagent kit (Takara, Shanghai, China). Quantitative real-time PCR (qRT-PCR) was carried out using SYBR Premix Ex Taq (Takara). To measure mature miRNAs expression, reverse transcription was performed using TaqMan MicroRNA Reverse Transcription Kit, and the quantification of mature miRNAs was tested using the TaqMan miRNA assay system (Life Technologies). Relative expression of target genes and miRNAs was calculated by the 2−ΔΔCt method. GAPDH and U6 were used as reference genes. The gene-specific primers are listed in Additional file 1: Table 1.
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3

Quantification of miRNA and mRNA Levels

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The levels of U6 and miR-455-3p were tested using the TaqMan miRNA assay system (Life Technologies Corporation, Shanghai, China). To detect mRNA expression, total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and was reverse transcribed into cDNA using the Transcriptor First Strand cDNA Synthesis Kit (Roche, Indianapolis, IN, USA). Quantitative real-time PCR was performed using SYBR green (Life Technologies, Grand Island, NY, USA). The expression levels of target genes and the results were normalized against β-actin expression. The primers used in this study were as follows: Has-miR-455-3p, forward: 5′-GCAGTCCATGGGCATATACAC-3′; U6, forward: 5′-CTCGCTTCGGCAGCACA-3′; HSF1, forward: 5′-CCTGGTCAAGCCAGAGAGAG-3′, reverse: 5′-CTGCACCAGTGAGATCAGGA-3′; α-SMA, forward: 5′-GGCTCTGGGCTCTGTAAGG-3′, reverse: 5′-CTCTTGCTCTGGGCTTCAT; C-3′; Collagen-I, forward: 5′-GCTCCTCTTAGGGGCCACT-3′, reverse: 5′-CCACGTCTCACCATT; GGGG-3′; TIMP-1, forward: 5′-GCAACTCGGACCTGGTCATAA-3′, reverse: 5′-CGGCCCGTGAT; GAGAAACT-3′; β-actin, forward: 5′-CTAAGGCCAACCGTGAAAAG-3′, reverse: 5′-ACCAGAGGCATACAGGGACA-3′.
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4

qRT-PCR Analysis of miRNA-106b

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qRT-PCR for mRNA was performed by iTaq™ Universal SYBRGreen (Bio-Rad Laboratories, CA, USA) on 7900HT Fast Real-Time PCR System (Life Technologies Corporation, USA). All PCR primers are listed in Supplemental Table 2. The expression of miRNA-106b and U6 was examined by TaqManmiRNA Assay system (Life Technologies Corporation, USA).
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5

Quantification of U6 and miR-30a Expression

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The levels of U6 and miR‐30a were tested using the TaqMan miRNA assay system (Life Technologies Corporation, Shanghai, China). To detect mRNA expression, complementary DNA was synthesized using RT‐Master Mix (TaKaRa‐Bio, Shiga, Japan) and reverse transcription was followed by RT‐PCR using the StepOnePlus RT‐PCR system (Applied Biosystems, Foster City, CA, USA). Primers used in this study are shown in Table S2.
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6

Reverse Transcription and qPCR for miRNA Detection

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To maximize the total amount of RNA available from each spent medium sample
collected, cDNA was synthesized using the Taqman MicroRNA Reverse Transcription
Kit (Life Technologies, Carlsbad, CA, USA) according to manufacturer
instructions. C. elegans miR-39 was used as an RNA spike-in to normalize gene
expression analysis. The detection of miRNAs was performed using Taqman miRNA
Assays (Life Technologies). The analysis of the expression obtained in real-time
quantitative PCR was performed using the SDS software (Life Technologies).
In a further step, cDNA was individually synthesized for each tested miRNA using
the miRNA Reverse Transcription kit (Life Technologies), according to
manufacturer instructions. The detection of miRNA expression was performed by
quantitative real-time PCR, using the TaqMan® MiRNA Assay system
(Life Technologies).
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7

Quantification of miR-488-5p Expression

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The TRIzol reagent was employed to extract total RNA on the basis of the standard instructions. Subsequently, RNA reversion and cDNA synthesis were carried out through using Reverse Transcription Kit (Vazyme). mRNA amplification and cDNA quantification were carried out through using SYBR green (Vazyme) on the basis of standard protocols. The levels of miR-488-5p and U6 were assessed via using TaqMan miRNA assay system (Life Technologies Corporation). The normalization of genetic level rests with U6 or β-actin level, respectively. The primers used are presented in Supplementary material.
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8

Quantifying miRNA and mRNA Levels

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Total RNA was extracted from tissue or cells with TRIzol reagent (Invitrogen). The Reverse Transcription Kit (Vazyme) was performed to reverse RNA and synthesize cDNA. SYBR green (Vazyme) was used to perform mRNA amplification and cDNA quantification. The levels of U6 and miR‐130b‐5p were detected by using TaqMan miRNA assay system (Life Technologies Corporation). Gene expression was normalized to snRNA U6 or β‐actin expression, respectively. Primer sequences are shown in Table S1.
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9

Exosomal miRNA Quantification Protocol

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Total RNA was extracted from exosomes using TRIzol Reagent (Thermo Fisher Scientific) according to the manufacturer's instructions. Reverse transcription and quantitative real-time PCR were performed using the TaqMan miRNA assay system (Thermo Fisher Scientific) according to the manufacturer's instructions and our previous description [7 (link)]. The relative miRNA levels were normalized to endogenous U6 small nuclear RNA for each sample.
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10

Quantitative RT-PCR for miRNA Expression

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Reverse transcription and quantitative real-time PCR were performed using the TaqMan miRNA assay system (Thermo Fisher Scientific) according to the manufacturer’s instructions and our previous description [6 (link)]. The relative miRNA levels were normalized to endogenous U6 small nuclear RNA levels for each sample.
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