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26 protocols using fetal calf serum (fcs)

1

Detailed Cell Culture Protocols for RMS, HUVEC, and MSC

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Human RMS cell lines, RD (ERMS) and RH30 (ARMS) [10 (link)], both from American Type Culture Collection,
were respectively cultured in Dulbecco’s modified Eagle’s and RPMI medium containing 10% fetal calf serum (Hyclone, Logan UT) and supplemented with glutamine and gentamycin (GIBCO-BRL Gaithersburg, MD). Human umbilical vein endothelial cells, HUVECs (Clonetics, San Diego, California, USA) were cultured in endothelial cell basal medium (EBM-2; Clonetics) supplemented with 2% of fetal calf serum (FCS; Clonetics) and endothelial growth medium (EGM2; Clonetics). Multipotent mesenchymal stromal cells (MSC) from Wharton’s jelly of umbilical cord [11 (link)], were cultured in Dulbecco’s modified Eagle’s medium containing 10% fetal calf serum (Hyclone) and supplemented with glutamine and gentamycin (GIBCO-BRL). Cells were incubated at 37 °C in 5% CO2. Medium was replaced every 3 days. Cells from passages 5–7 were used for all the experiments. DNA profiling, using the GenePrint 10 System (Promega Corporation, Madison, WI, USA), was carried out to authenticate cells by comparing the DNA profile of our cell cultures with those found in GenBank. MycoFluor™ Mycoplasma Detection Kit Invitrogen™ was used.
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2

Angiogenesis Tube Formation Assay

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In total, 2 × 103 BECs were seeded in µ-slide angiogenesis chambers (Ibidi, Munich, Germany) on growth factor-reduced matrigel (BD Biosciences, San Jose, CA, USA). Cells were supplemented with 0, 10, 100 or 1000 ng/ml of recombinant CCL20 (R&D Systems) in EGM-2MV containing 5% FCS (Clonetics). Tube formation was imaged with a Zeiss Cell Observer (Zeiss).
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3

Isolation and Characterization of FLS

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FLS were successfully isolated from RA (n = 6), OA (n = 6) and healthy (n = 6) synovial biopsies subjected to a mild proteolytic treatment with 0.05% trypsin and 0.5 mM EDTA in phosphate-buffered saline (PBS) for 10 minutes at 37 °C under gently shaking. Trypsin was then neutralized with fetal calf serum (FCS) (Celbio, Milan, Italy) and cells were plated in culture dishes (3 cm diameter, BD Falcon, BD Biosciences, San Jose, CA, USA) at a concentration of 1–1.5 × 106 per dish in RPMI 1640 medium (Cambrex Bio Science, Milan, Italy) supplemented with 15% FCS, 2 mM glutamine and penicillin–streptomycin (Cambrex Bio Science). Once at confluence (about 3 weeks), the cell monolayers were expanded in culture by splitting 1:2 every 7 days. The cells were considered FLS (type B synoviocytes) if negative by immunostaining with anti-CD68, anti-CD14, anti-CD11b and anti-CD11c antibodies (markers of type A macrophage-like synoviocytes), positive by staining for the enzyme uridine diphosphoglucose dehydrogenase (preferentially expressed by the intimal lining FLS and reflecting their ability to synthesize hyaluronan, an important constituent of synovial fluid)3 (link), and if they had a spindle-shaped, fibroblast-like morphology ( > 95% cell purity). Cell monolayers were used within the seventh passage in culture.
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4

Melanoma Cell Lines and Dasatinib Preparation

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Lox-IMVI, Malme-3M, M14, Sk-Mel-5, and Sk-Mel-28 were obtained from the Department of Developmental Therapeutics, National Cancer Institute (NCI), HT144 from the American Tissue Culture Centre (ATCC) and WM-115 and WM-266-4 from the European Collection of Cell Cultures (ECACC). Lox-IMVI, Malme-3M, Sk-Mel-5, and Sk-Mel-28 were maintained at 37 °C with 5 % CO2 in RPMI medium with 10 % FCS (Cambrex). HT144 was maintained in McCoys 5A (Sigma-Aldrich) with 10 % FCS. WM-115 and WM-266- 4 were maintained in MEM media with 10 % FCS, 2 mM L-glutamine, 1 mM NEAA and 1 mM sodium pyruvate (all Gibco). Stock solutions of dasatinib (10 mM) (Sequoia Research Products) were prepared in dimethyl sulfoxide (Sigma-Aldrich).
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5

PBMC Isolation from Whole Blood

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PBMCs were isolated from heparinized whole blood by Ficoll density gradient centrifugation [35 (link),36 (link)]. Briefly, the plasma from the whole blood was separated by centrifugation at 2500 rpm for 10 min. The pellet was resuspended with PBS and slowly layered over a layer of Ficoll in a 50 mL conical tube. After centrifugation at 1800 rpm for 40 min with no brake, the buffy coat containing PBMC was separated gently without disturbing the other layers. The PBMC was washed twice with 2% fetal bovine serum (FBS)-PBS and resuspended in RPMI-1640 with 10% FCS (Cambrex, Walkersville, MD, USA), supplemented with 10 mM HEPES, 2 mM L-glutamine, 100 U/mL penicillin, and 100 µg/mL streptomycin (BioWhittaker, Lonza, Walkersville, MD, USA) (referred to as complete media onward).
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6

Isolation of Fibroblast-like Synoviocytes

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Fibroblast-like synoviocytes were successfully isolated from 6 HA and 6 OA control synovial biopsy specimens subjected to a mild proteolytic treatment with 0.05% trypsin and 0.5 mM EDTA in phosphate-buffered saline for 10 min at 37 °C under gentle shaking as described elsewhere [29 (link)]. Trypsin was then neutralized with fetal calf serum (FCS) (Celbio, Milan, Italy) and cells were plated in culture dishes in RPMI 1640 medium (Cambrex Bio Science, Milan, Italy) supplemented with 15% FCS, 2 mM glutamine and penicillin-streptomycin (Cambrex Bio Science). The cells were considered fibroblast-like synoviocytes (type B synoviocytes) if negative on immunostaining with anti-CD68, anti-CD14, anti-CD11b, and anti-CD11c antibodies (markers of type A macrophage-like synoviocytes), positive by staining for the enzyme uridine diphosphoglucose dehydrogenase and if they had a spindle-shaped, fibroblast-like morphology (>95% cell purity). HA and OA fibroblast-like synoviocyte monolayers were used within the seventh passage in culture.
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7

EV Isolation from Serum-free HeLa Cells

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Cervix carcinoma HeLa and EBV‐B cell lines were cultured in IMDM (Lonza BioWhittaker, Basel, Switzerland) with 10% FCS (Cambrex, Verviers, Belgium), 1% penicillin/streptomycin (Lonza) and 1.5% L‐glutamine (Lonza). CD4 T‐cell clones were cultured in IMDM with 5% human serum, 5% FCS and 100 IU/mL IL‐2 (Chiron, Ringskiddy, Ireland), and restimulated every 10–20 days with irradiated allogeneic PBMC and 0.8 μg/mL PHA (Oxoid, Cambridge, UK) 15. For isolation of EV, HeLa cells were cultured in serum‐free IMDM with 1% penicillin/streptomycin, 1.5% L‐glutamine, 5 μg/mL insulin (Sigma‐Aldrich B.V., Zwijndrecht, The Netherlands), 5 μg/mL transferrin (Invitrogen, Breda, The Netherlands), 5 ng/mL EGF (PeproTech, Rocky Hill, NJ), 100 nM hydrocortisone (Sigma‐Aldrich B.V.) and 20 ng/mL FGF2 (Biaffin GmbH & Co KG, Kassel Niederzwehren, Germany) 39.
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8

Monocyte Differentiation into Dendritic Cells

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The monocytes were suspended in RPMI-1640 supplemented with 100 U/ml penicillin, 0.1 mg/ml streptomycin, 2 mM L-glutamine (Gibco, Grand Island, NY) and enriched with 10% (v/v) FCS (heat inactivated; Cambrex, Belgium) (complete RPMI-1640, cRPMI-1640). The density was adjusted to 1 × 106 cells/ml and the cells were seeded into 6-well flat-bottom plates (Falcon) and cultured for 6 days at 37°C, 5% CO2 in cRPMI-1640 medium in the presence of 10 ng/ml IL-4 and 25 ng/ml GM-CSF (R&D Systems, Minneapolis, MN) to allow cells to differentiate into DCs. The mean percentages of DCs obtained from monocytes isolated from buffy coats was 54.69%.
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9

Propagation and Maintenance of Influenza Viruses

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Influenza virus A/chicken/Tainan/V156/1999 (H6N1; Ck/ Tainan) was provided by the Animal Health Research Institute, Council of Agriculture, Taiwan. Influenza virus A/duck/Hong Kong/960/1980 (H6N2; Dk/HK) was kindly provided by Professor Ken F. Shortridge, The University of Hong Kong, Hong Kong SAR. These viruses were propagated in 10 day old embryonated chicken eggs at 35°C for 48 hr, and the infectious allantoic fluids were used as virus stocks. MDCK cells were maintained in minimum essential medium (MEM; Nissui Pharmaceutical, Tokyo, Japan) supplemented with 0.3 mg/ml L-glutamine, 100 U/ ml penicillin G, 0.1 mg/ml streptomycin, 8 µg/ml gentamicin, and 10% FCS (Sigma Aldrich, St. Louis, MO, USA). Human embryonic kidney (HEK) 293T cells were maintained in Dulbecco's modified Eagle's medium (DMEM; Thermo Fisher Scientific, Waltham, MA, USA) supplemented with the same concentration of L-glutamine and antibiotics with MEM and 10% FCS (Cambrex, East Rutherford, NJ, USA). HEK 293S GnT (-) cells, which lack N-acetyl-glucosaminyltransferase I activity, were maintained in pyruvate-free DMEM (Thermo Fisher Scientific) with the same supplements as DMEM.
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10

Cell Line Propagation for Research

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The swine kidney cell line SK-L [15 (link)] was propagated in Eagle’s minimum essential medium (MEM) (Nissui Pharmaceutical, Tokyo, Japan) supplemented with 0.295% tryptose phosphate broth (Becton Dickinson, San Jose, CA, USA), 10 mM N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (Sigma-Aldrich, St. Louis, MO, USA) and 10% horse serum (Life Technologies, Carlsbad, CA, USA). The SK6-MxLuc cell line carrying a Mx/Luc reporter gene [16 (link)] was propagated in MEM supplemented with 0.295% tryptose phosphate broth and 7% horse serum. The human embryonic kidney cell line 293T was maintained in Dulbecco’s MEM (Life Technologies) and 10% fetal calf serum (Cambrex, Grand Island, NY, USA). All cells were incubated at 37 °C in the presence of 5% CO2.
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