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A1rsi confocal microscope

Manufactured by Leica camera

The A1Rsi confocal microscope is a high-performance imaging system designed for advanced biological and materials research. It features a proprietary scanning system that provides fast and efficient optical sectioning, enabling the capture of high-resolution, three-dimensional images. The microscope is equipped with multiple laser lines and sensitive detectors, allowing for the visualization of a wide range of fluorescent samples. The A1Rsi's core function is to provide researchers with a powerful tool for non-invasive, high-resolution imaging of complex specimens.

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4 protocols using a1rsi confocal microscope

1

Immunostaining of Pancreatic Cell Markers

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Cells or cell assemblies were fixed within the well using 4% paraformaldehyde treatment overnight at 4 °C. Non-specific antibody binding was blocked with a 30-min treatment in staining buffer (5% donkey serum (Jackson Immunoresearch; 017–000-121) and 0.1% Triton-X 100 (Acros Organics; 327371000) in PBS) followed by overnight staining with 1:300 dilutions of rat-anti-C-peptide (DSHB; GN-ID4-S), mouse-anti-CD31 (Dako; M082329–2), goat-anti-PDX1 (R&D Systems; AF2419), and/or mouse-anti-NKX6–1 (University of Iowa, Developmental Hybridoma Bank; F55A12-supernatant) primary antibodies. Samples were stained with donkey secondary antibodies containing Alexa Fluor fluorophores (Invitrogen) for 2 hr at 4 °C and treated with DAPI. Imaging was performed on a Nikon A1Rsi confocal microscope or Leica DMI4000 microscope. Quantification was done with manual counting.
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2

Immunofluorescence Staining of Dispersed Cells

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Measurements were performed as we previously described (Velazco-Cruz et al., 2019 (link)). Stage 6 clusters were single-cell dispersed with trypLE, plated overnight, and fixed with 4% paraformaldehyde (Electron Microscopy Science; 15714) for 30 min at RT. Samples were treated for 30 min with blocking/permeabilizing/staining solution (5% donkey serum (Jackson Immunoresearch; 017-000-121) and 0.1% Triton X-100 (Acros Organics; 327371000) in PBS). Samples were then incubated overnight at 4°C with primary antibody diluted in staining solution, incubated 2 hr at 4°C with secondary antibodies diluted in staining solution, and stained with DAPI for 5 min. Nikon A1Rsi confocal microscope or Leica DMI4000 fluorescence microscope were used to take images. The antibodies used are listed in Table S4.
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3

Immunofluorescence Staining of Dispersed Cells

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Measurements were performed as we previously described (Velazco-Cruz et al., 2019 (link)). Stage 6 clusters were single-cell dispersed with trypLE, plated overnight, and fixed with 4% paraformaldehyde (Electron Microscopy Science; 15714) for 30 min at RT. Samples were treated for 30 min with blocking/permeabilizing/staining solution (5% donkey serum (Jackson Immunoresearch; 017-000-121) and 0.1% Triton X-100 (Acros Organics; 327371000) in PBS). Samples were then incubated overnight at 4°C with primary antibody diluted in staining solution, incubated 2 hr at 4°C with secondary antibodies diluted in staining solution, and stained with DAPI for 5 min. Nikon A1Rsi confocal microscope or Leica DMI4000 fluorescence microscope were used to take images. The antibodies used are listed in Table S4.
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4

Purification and Characterization of Retinal Ganglion Cells

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Cells were fixed in 4% paraformaldehyde for 15 minutes, permeabilized and blocked in 0.1% Triton X-100 in PBS with 3% bovine serum albumin and 3% normal goat serum and for 1 hour at room temperature, and then incubated with primary antibody overnight at 4 °C. Primary antibodies used were Brn3a (Santa Cruz, TX, 1:200), βIII-tubulin (Thermo Scientific, MA 1:500), GFAP (Sigma-Aldrich, MO, 1:500), ASMase H181 (Santa Cruz, TX, 1:500). Cells were incubated with corresponding secondary antibodies for 2 hours at room temperature. DAPI (ThermoFisher Scientific, MA, 1:1000) was used to stain nuclei. Fluorescence images were acquired with a Nikon A1Rsi confocal microscope with 20x and 60x objective lenses (Fig.4) and Leica confocal microscope with 20x objective lens (Fig.3). We found two types of cells after purification with Thy 1.2 coated microbeads. The majority of cells are RGCs, on the basis of their expressing Brn3a and βIII-tubulin. Some cells also express Thy 1.2 but display distinct morphology: the size of their nuclei are 2-4 time larger than RGC nuclei, do not express Brn3a or βIII-tubulin, and do not have typical neurites. Only Brn3a and βIII-tubulin positively-stained cells were used for assessing RGC responses in this study.
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