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13 protocols using pe rat anti mouse cd4

1

Optimizing CD8 T Cell Depletion in Mice

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To optimize the dosing regimen for CD8 T cell depletion, C57BL/6J mice received 300 μg of anti‐CD8α mAb (Bio X Cell Cat#BE0061, RRID:AB_1125541) or isotype control (Bio X Cell Cat# BE0090) mAb via the intraperitoneal route on days −3, −1, 6, 13, and 20. Spleens were harvested on days 5, 10, 17, and 25 and single‐cell suspensions were stained with APC‐H7 rat anti‐mouse CD8α (BD Biosciences Cat#560182, RRID: AB_1645237), PerCP/Cy5.5 rat anti‐mouse CD45 (BD Biosciences Cat# 561869), and PE rat anti‐mouse CD4 (BD Biosciences Cat# 553049). To confirm CD8 T cell depletion following ABLV‐luc infection, spleens were harvested from an isotype control mouse and a CD8 T cell‐depleted mouse on day 5 post‐infection. Single‐cell suspensions were stained with Alexa Fluor 647 rat anti‐mouse CD8α (clone 53‐6.7, purified from hybridoma supernatants and labeled in‐house), PerCP/Cy5.5 rat anti‐mouse CD45 (BD Biosciences Cat# 561869), and PE rat anti‐mouse CD4 (BD Biosciences Cat# 553049). Flow cytometry was performed with a BD LSRII flow‐cytometer, and data were analyzed with FlowJo Software.
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2

Flow Cytometry, Western Blot, and Cytotoxicity Assays

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The following antibodies were used for flow cytometry, Western blot, and cytotoxicity assay. Anti-mouse IL-15Rα antibody (sc-374023; Santa Cruz), anti-mouse IL-15 antibody (Ab7213; Abcam, UK), FITC-rat anti-mouse CD4 (553729; BD, USA), PE-rat anti-mouse CD4 (553730; BD), FITC-rat anti-mouse CD8 (553031; BD), APC-rat anti-mouse CD62L (104411; BioLegend), PE-rat anti-mouse CD44 (553134; BD), purified hamster anti-mouse CD3 (557306; BD), FITC-goat anti-hamster (Armenian) IgG (405502; BioLegend), APC-rat anti-mouse CD49b (108909; BioLegend), purified anti-mouse CD8 (100701; BioLegend), purified anti-mouse (100401; BioLegend), FITC-rat anti mouse CD11b (557396; BD), PE-rat anti-mouse MHC class II I-A/I-E M5/114 (562010; BD), anti-Ld MHC class I (24-14-8S), FITC-secondary goat anti-mouse IgG (sc-2005; Santa Cruz).
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3

Flow Cytometric Analysis of Splenic Immune Cells

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At the end of the experiment, spleens were isolated from ApoE KO mice and placed in a chilled RPMI-1640 medium (Gibco, Carlsbad, CA, USA), mashed through a 70 µm nylon cell filter (Corning, Corning, NY, USA), and centrifuged at 400× g for 5 min. The obtained splenocytes were stained with relevant antibodies. The following antibodies were used: CD4-PE (553048, PE Rat Anti-Mouse CD4, BD Biosciences, Franklin Lakes, NJ, USA), CD8-PE (553032, PE Rat Anti-Mouse CD8a, BD Biosciences, USA), and FoxP3-Alexa Fluor 488 (560403, Alexa Fluor 488 Rat anti-Mouse Foxp3, BD Biosciences, USA). The following isotype match antibodies were used: IgG2a-PE (551799, PE Rat IgG2a, k Isotype Control, BD Biosciences, USA), and IgG2b-FITC (556923, FITC Rat IgG2b, k Isotype Control, BD Biosciences, USA). A flow cytometry analysis was performed on a Beckman Coulter Flow Cytometer (BD Biosciences, USA). Obtained data were analyzed using FlowJo software (FlowJo LLC, Franklin Lakes, NJ, USA).
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4

Investigating Claudin Regulation in Tight Junctions

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AMP-IBP5 (AVYLPNCDRKGFYKRKQCKPSR-NH2; molecular weight: 2655.1) was obtained from the Peptide Institute (Osaka, Japan) and was dissolved in acetic acid (0.01%). IgG isotype control and antibodies specific for phosphorylated and unphosphorylated aPKCζ and Rac1 were purchased from Cell Signaling Technology (Beverly, MA, USA). A rabbit monoclonal antibody specific for claudin-1 was purchased from Cell Signaling Technology. Mouse monoclonal antibodies specific for claudin-4, occludin, and ZO-1 were obtained from Invitrogen (Carlsbad, CA, USA). A rabbit polyclonal antibody specific for claudin-7 was purchased from Invitrogen. The aPKCζ inhibitor GF 109203X was obtained from Enzo Life Sciences (Farmingdale, NY, USA). The Rac1 inhibitor NSC23766 was obtained from Calbiochem (La Jolla, CA, USA). Enzyme-linked immunosorbent assay (ELISA) kits were obtained from R&D Systems (Minneapolis, MN, USA). The EZ-linkTM Sulfo-NHS-LC-Biotin tracer was purchased from Thermo Scientific (Waltham, MA, USA). Recombinant human and mouse LRPAP were obtained from R&D Systems. Toluidine blue solution (0.05%, pH 4.1) was purchased from Muto Pure Chemicals Co. Ltd. (Tokyo, Japan). Recombinant human IL-4 and IL-13 were obtained from BioLegend (San Diego, CA, USA). A mouse monoclonal antibody specific for CD4 (PE rat anti-mouse CD4) was purchased from BD Bioscience (San Jose, CA, USA).
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5

Adoptive Transfer of Splenic CD4+CD45RBhigh T Cells

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Using a well-established protocol [3 (link)], splenic CD4+CD45RBhigh T cells from C57BL/6 WT mice were adoptively transferred into same-sex 8–12-week-old Rag1tm1Mom mice. First, the spleens from C57BL/6 WT mice were removed and placed in FACS buffer (PBS, fetal bovine serum, and sodium azide). Then, the spleens were homogenized by rubbing between glass slides until a single-cell suspension was created. The single-cell suspension was passed through a 70µm cell strainer. Cells were enriched by negative isolation using Dynabeads Untouched Mouse CD4 Cell Kit (Life Technologies AS, Carksbad, CA, USA) according to the manufacturer’s instructions. CD4 cells were fluorescently labeled with fluorescein isothiocyanate (FITC) rat anti-mouse CD45RB (Thermo Fischer Scientific, Waltham, MA, USA) and phycoerythrin (PE) rat anti-mouse CD4 (BD Biosciences, Franklin Lakes, NJ, USA). CD4+ T cells were sorted using a Becton-Dickenson Influx cell sorter by double gating on CD4+ singlet cells and the brightest 40% CD45RBhigh cells. Cells were sorted into tubes containing post-sorting buffer (PBS, EDTA, FBS) to stabilize the post-sorted T cells. In total, 5 × 105 CD4+CD45RBhigh T cells were then injected intraperitoneally into recipient Rag1tm1Mom mice of the same sex as the T cell donors.
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6

Multiparametric Flow Cytometry Analysis of Immune Cell Development

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Mouse blood cell and lymphocyte development were analyzed by flow cytometry (36 (link), 37 (link)). B lymphocyte development was conducted by staining with cocktails including FITC anti-mouse CD43 (Biolegend, 553270), PE goat anti-mouse IgM (Southern Biotech, 1020-09), PE-cyanine5 anti-Hu/Mo CD45R (B220) (eBioScience, 15-0452-83), and APC anti-mouse TER119 (Biolegend, 116212). T lymphocyte development was measured on thymocytes using cocktail including PE rat anti-mouse CD4 (BD Pharmingen, 557308), FITC anti-mouse CD8a (Biolegend, 100706), PE/Cy5 anti-mouse CD3e (eBioscience, 15-0031-83), and APC anti-mouse TCRβ (BD Pharmingen, 553174). Myeloid cells were measured in bone marrow cells and splenocytes using cocktail including FITC anti-mouse CD11b (BD Pharmingen, 553310), PE rat anti-mouse CD19 (BD Pharmingen, 557399), PE/Cy5 anti-mouse CD3e (eBioscience, 15-0031-83), and APC anti-mouse Ly6G/Ly6C(Gr-1) (Biolegend, 108412). Purified splenocyte CSR was stained with PE-cyanine5 anti-Hu/Mo CD45R (B220) and FITC rat anti-mouse IgG1(BD Pharmingen, 553443). All antibodies were diluted according to the manufacturer’s protocol. The flow cytometry data were collected on either an LSR II (BD), or on an Attune NxT (Invitrogen) flow cytometer. All flow cytometry data were analyzed using FlowJo V10.
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7

Flow Cytometric Profiling of Splenocyte Subsets

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Splenocyte single-cell suspensions in RPMI 1640 (10 6 cells/ml) prepared above had their levels of CD19 + , CD3 + , CD4 + and CD8 + cell subtypes determined with the aid of a FACS Calibur flow cytometer (BD, San Jose, CA) in a central collaborative laboratory that performs these analyses for all investigators at the Bu-Ali Research Institute (Mashhad, Iran). For these analyses, cells were stained using a mouse T-lymphocyte subset antibody cocktail kit (with isotype control) containing PE-Cy7-hamster anti-mouse-CD3e, PE-rat anti-mouse-CD4, FITC rat antimouse-CD8 (BD Pharmingen, San Diego, CA) or with FITC [rat]-anti-mouse-CD19 (with isotype control, eBioscience, San Diego, CA), according to manufacturer protocols. A minimum of 10 000 events/sample was acquired for each sample. The absolute number of each cell type in each spleen was determined by multiplying the differential ratio of the subtypes by the total spleen cell contents (Riahi et al., 2010) . Levels of T-lymphocyte subsets and CD19 cells in the splenocyte suspensions were separately determined.
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8

Cytokine Modulation in Colitis Model

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KFXL was provided by Haoyisheng Pharmaceutical Company Limited (Sichuan, China). DSS was purchased from Shenzhen Lijing Biological Technology Co., Ltd (Shenzhen, China). SASP was obtained from Shanghai Xinyitianping Pharmaceutical Company, Ltd (Shanghai, China). Interleukin-1β (IL-1β), interleukin-10 (IL-10), interleukin-17 (IL-17), and epidermal growth factor (EGF) kits were from Nanjing Jiancheng Bioengineering Institute. Rat anti-mouse CD3 FITC, Rat anti-mouse CD4 PE, Rat anti-mouse CD8 APC, and Rat anti-mouse CD25 Percp-cy5.5 were acquired from BD Biosciences Co., Ltd.
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9

Murine Splenic Lymphocyte Characterization

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At 21 and 42 days of age, splenic samples of eight mice in each group were taken to determine the percentages of CD3+, CD4+, CD8+ T lymphocyte and CD 19+ B lymphocyte by FCM.
Each spleen was cut into pieces and then filtered through nylon gauze as splenic single-cell suspension. The suspension was centrifuged at 200 × g for 5 min. The supernatant was discarded and lymphocytes were collected. The cell concentration was determined by using the normal counting method of blood cells and then diluted to 1.0 × 106 cells/mL with phosphate-buffered saline (PBS). A total of 100 μL cell suspensions was transferred to another centrifuge tube. The cells were respectively stained with 10 μL hamster anti-mouse CD3e-FITC (BD, Cat No: 553062), rat anti-mouse CD4-PE (BD, Cat No: 557308), rat anti-mouse CD8a-PerCP (BD, Cat No: 553036) and FITC anti-mouse CD19+(BD, Cat No: 553785) for 30 min at RT, and then 2 mL PBS was added and centrifuged at 200 × g for 5 min. The supernatant was discarded. Cells were resuspended in 0.5 mL PBS and determined by BD FACS Calibur flow cytometer.
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10

Multicolor Flow Cytometry Immunophenotyping

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Splenocytes were stained with Mouse Anti-Mouse NK 1.1- APC (BD Biosciences, USA), Rat Anti-Mouse CD3-PE (BD Biosciences, USA), Rat Anti-Mouse CD4-PE (BD Biosciences, USA), and Rat Anti-Mouse CD8-APC (BD Biosciences) according to the manufacturer’s instructions. After staining, cells were analyzed by flow cytometry (Novocyte Flow Cytometer, ACEA Biosciences, USA). The positivity of CD8, CD4, and CD3 was determined by comparison with the defined cutoff values obtained with unstained control cells as previously described [18 (link)].
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