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3 protocols using alexa fluor 594 conjugated goat anti mouse immunoglobulin g

1

Alkaline Phosphatase and Immunofluorescence Analysis

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The cells were fixed with 3.7% paraformaldehyde (Wako) in PBS for 10 minutes at room temperature. After washing with PBS three times, the level of alkaline phosphatase (AP) activity was detected by using the Vector Alkaline Phosphatase Substrate kit III (Vector Laboratories, Burlingame, CA, USA) according to the manufacturer's instructions.
For the immunofluorescence analysis, cells were fixed with PBS that contained 3.7% paraformaldehyde for 10 minutes at room temperature. After washing with PBS, the cells were blocked with PBS that contained 5% BSA (Sigma–Aldrich) and 0.1% Triton X‐100 (Sigma–Aldrich) for 45 minutes at room temperature. Then, they were incubated overnight at 4°C with a primary antibody T (Brachyury, 1:1000, ab20680; Abcam, Tokyo, Japan). Alexa Fluor 594‐conjugated goat anti‐mouse immunoglobulin G (1:500; Invitrogen Life Technologies) was used as the secondary antibody. The nuclei were stained with 1 μg/mL Hoechst 33342 (Sigma–Aldrich).
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2

Immunostaining of H3K9me3 in Cells

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Immunostaining was performed as previously described (Maeshima et al., 2010 (link); Hihara et al., 2012 (link)). Cells were fixed in 2% formaldehyde (Wako) and permeabilized with Triton X-100. The primary and secondary antibodies were mouse anti-H3K9me3 (a generous gift from Hiroshi Kimura) and Alexa-Fluor-594-conjugated goat anti-mouse immunoglobulin G (Invitrogen) used at dilutions of 1:500 and 1:1000, respectively. Then DAPI (500 ng/ml) was added to the cells for 5 min, followed by washing with PBS prior to DNA staining. Images were obtained using a DeltaVision microscopy imaging system (Applied Precision) or a FLUOVIEW FV1000 confocal laser scanning microscope (OLYMPUS).
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3

Immunofluorescence Analysis of Mitochondrial Proteins

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Glass coverslips in 24-well plates were coated with 200 μl of 0.01% poly-l-ornithine solution. After aspiration and drying, 0.5 × 106 cells in 500 μl of media were plated and differentiated with PMA for 18 h. Cells were washed 1× with PBS, and media were replaced with LCIS. After 20 μM nigericin stimulation for indicated time points, 500 μl 4% formaldehyde in PBS was added directly to culture medium for 2 min. After 2 min, the prefixation culture medium was replaced with 500 μl of 2% formaldehyde in PBS for 20 min. Cover slips were washed 3× with PBS and then blocked and permeabilized for 1 h in PBS containing 1% bovine serum albumin (BSA), 3% goat serum, and 0.3% Triton X-100. Coverslips were then incubated overnight at 4° overnight with primary antibody in PBS containing 1% BSA and 0.3% Triton X-100. Primary antibodies used were anti-MT-CO1, 1:1000 dilution (Invitrogen; catalog no.: 459600). Primary antibodies were visualized by staining with Alexa Fluor 594–conjugated goat antimouse immunoglobulin G (Invitrogen; catalog no.: A11005). Coverslips were counterstained and mounted with ProLong Diamond Antifade Mountant with 4′,6-diamidino-2-phenylindole (Invitrogen; catalog no.: P36962) and imaged using an Olympus IX73 inverted microscope system with 4′,6-diamidino-2-phenylindole, FITC, and tetramethylrhodamine filters at 60× objective.
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