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1

Optimized Immunoassay Protocol for Biomarker Quantification

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We used the following monoclonal and polyclonal capture and detection antibodies: PAPP-A (capture, Hytest, Turku, Finland; detection, R&D Systems, Minneapolis, MN, USA), fβ-hCG (capture, Acris Antibodies GmbH, Herford, Germany; detection, Hytest), AFP (both from Hytest), ANGPTL3 (both from R&D Systems), EGF (both from R&D Systems), IGFII (capture, Abcam, Cambridge, UK; detection, R&D Systems), SOD1 (capture, R&D Systems; detection, Hytest), and IgG (H + L) (Invitrogen, Breda, The Netherlands). Note that IgG was added for quality control purposes. Standards for PAPP-A and fβ-hCG were obtained from the AutoDELFIA kits. These standards were calibrated against the WHO International Reference Preparation (PAPP-A: 78/610 for SP1, fβ-hCG: 75/551). In addition to serum samples from the serum bank, the reference serum was used to correct for interarray variation.
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2

Western Blot Analysis of Protein Expression

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Total protein from the human HCC cell lines was extracted using RIPA buffer (Pierce, Rockford, IL, USA). Equal amounts of protein for each sample were subjected to SDS-PAGE followed by transfer of protein to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA). The membranes were first incubated with antibodies against IGF-II (Abcam, Cambridge, UK), Ago1 (Millipore, Billerica, MA, USA), Ago2 (Millipore), RNAP II (Millipore), α-tubulin (Abcam), Topoisomerase I (Abcam), and GAPDH (Abcam), then followed by incubation with HRP-conjugated secondary antibodies. GAPDH (Abcam) was served as a loading control. The results were visualized using an enhanced chemiluminescence detection system (Amersham Biosciences, Piscataway, NJ, USA). Bands were quantified with Image-Pro Plus software (Media Cybernetics, USA). Each experiment was repeated thrice and all reactions were carried out in triplicate.
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