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5 protocols using ml 265

1

Photoreceptor-like cell line protocol

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The 661W photoreceptor-like cell line was utilized for all in vitro studies and was provided by Dr. Muayyad al-Ubaidi (Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA) [26 (link)]. Dulbecco’s modified Eagle’s medium (DMEM, Thermo Fisher Scientific, Waltham, MA, USA, Cat No. 11995065) supplemented with 10% fetal bovine serum (FBS), 90 units/mL penicillin, 0.09 mg/mL streptomycin, 32 mg/L putrescine, 40 µL/L of β-mercaptoethanol, and 40 µg/L of both hydrocortisone 21-hemisuccinate and progesterone was utilized. Cells were grown at 37 °C in 5% CO2 and 95% air.
Chemicals. Reagents of analytical grade were purchased from Sigma (St. Louis, MO, USA) or Combi Blocks Inc. (San Diego, CA, USA). ML-265 was obtained through Cayman Chemical (Ann Arbor, MI, USA; CAS 1221186-53-3).
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2

Analytical Grade Reagents Protocol

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All reagents were analytical grade and purchased from Sigma (St. Louis, MO). ML-265 was purchased from Cayman Chemical (Ann Arbor, MI; CAS 1221186-53-3).
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3

Rod Photoreceptor-Specific Pkm2 Knockout

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All animals were treated in accordance with the Association for Research in Vision and Ophthalmology (ARVO) Statement for the Use of Animals in Ophthalmic and Vision Research. The protocol was approved by the University Committee on Use and Care of Animals of the University of Michigan (Protocol number: PRO00007463). Brown-Norway, adult rats were utilized for all in vivo ML-265 (Cayman Chemical, Ann Arbor, MI; CAS 1221186-53-3) studies except ocular pharmacokinetic studies. All rats were housed at room temperature with 12-hour light and 12-hour dark cycle. Dutch-belted rabbits were used to study the ocular pharmacokinetics of ML-265. Rod photoreceptor-specific, Pkm2 conditional knockout mice (Rho-Cre:Pkm2f/f) were created by crossing mice with Lox-P sites flanking Pkm2-specific exon 10 (Pkm2fl°x/fl°x, Jackson Laboratories, Bar Harbor, ME) with Rho-Cre mice (courtesy of David Zacks, MD, PhD), in which Cre-combinase is expressed specifically in rod photoreceptors as previously described15 (link),51 (link),52 (link).
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Macrophage Differentiation and Polarization

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PBMCs were isolated using density gradient centrifugation using Lymphoprep (STEMCELL Technologies). Monocytes isolated by plastic adherence were differentiated into macrophages in RPMI 1640 medium (Life Technologies) supplemented with 20 ng/ml of M-CSF (eBioscience) and 10% of FBS (Lonza) for 5 d. Alternatively, monocytes were isolated using the EasySep human monocyte enrichment kit without CD16 depletion (STEMCELL Technologies). Macrophages were further differentiated into M1 or M2 macrophages by stimulation with 100 U/ml of IFN-γ (Sino Biologicals) and 100 ng/ml of LPS (Sigma-Aldrich), or 10 ng/ml of IL-4 and 10 ng/ml of IL-13 (Sino Biologicals). Attached macrophages were dissociated from plates using StemPro Accutase Cell Dissociation Reagent (Life Technologies).
To scavenge ROS, macrophages were stimulated in the presence of the ROS-scavenger Tempol (Sigma-Aldrich) or the mtROS scavenger MitoTempo (Santa Cruz Biotechnology, Inc.). Assembly of the NOX2 membrane complex was inhibited with gp91dstat (Anaspec). Glycolytic activity was blocked with 10 mM of 2-DG or by using glucose free RPMI 1640 medium (Life Technologies). PKM2 tetramerization was enforced with 50 µM of ML265 (Cayman Chemical). HIF-1α was inhibited with 10 µM of CAS (934593–90-5; Santa Cruz Biotechnology, Inc.). STAT3 phosphorylation was inhibited with 5 µM of Stattic (Sigma-Aldrich).
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Adipocyte Differentiation Modulation

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Adipocyte differentiation was initiated by culturing confluent cells in adipogenic induction medium consisting of the growth medium supplemented with 160 nM insulin (Sigma-Aldrich, I9278), 250 nM dexamethasone (Sigma-Aldrich, D4902), and 0.5 mM 1-methyl-3-isobutylxanthine (IBMX, Sigma-Aldrich, I7018) (day 0). Forty-eight hours later (day 2), the cells were switched to maintenance medium supplemented just with insulin. After 48 hours (day 4), the cells were placed back in unsupplemented maintenance medium, which was changed every 48 hours. For lysosomal flux assays, cells were treated with 20 mM ammonium chloride (Sigma-Aldrich, AX12701) or 100 μM leupeptin (Thermo Fisher Scientific, BP266225) for 12 hours at the indicated time points in differentiation. For proteasomal flux assays, cells were treated with lactacystin (5 μM; Enzo Life Sciences, BMLPI104) for 12 hours at the indicated time points, and efficacy of inhibition was monitored by tracking changes in K48-ubiquitinated proteins. TGFβ inhibitor (SB525334, Tocris, 3211) was added to differentiating cells at day 1.5 at 1 μM for 12 hours. ML265 (Cayman Chemical, 13942) was added to activate glycolysis in control cells at 1 and 2 μM for 12 hours.
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