The largest database of trusted experimental protocols

15 protocols using ccd camera dfc420

1

Immunohistochemical Assessment of Biomarkers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue microarrays were constructed and immunohistochemistry was performed as described previously.39 (link) Evaluation of immunohistochemical variables in the tissues was performed using a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (UK). SOX9, MCM2 and MDC1 immunostaining was assessed using the semiquantitative histological score (H-score) approach, which combines the intensity and number of cells positive for each marker expression. Ten random × 400 microscopic fields per slide were evaluated. The mean percentage of positively stained cells was scored as follows: 0% (0); 1–10% (1); 11–25% (2); 26–50% (3); 51–75% (4) and 76–100% (5). Staining intensity was categorized as follows: – (0);+(1); ++ (2) +++ (3) and ++++ (4). The evaluation of immunohistochemical variables was performed without knowledge of the clinicopathologic data by two independent investigators. Where discrepancies were observed, results were jointly assessed by both investigators and the final score was formed by consensus.
+ Open protocol
+ Expand
2

Quantifying CD34 and PD-L1 in Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
For CD34 evaluation, immunoreactivity that is continuously arranged around the tumor cluster, and VETC+ was evaluated semi-quantitatively and defined as CD34 positive area ≥55%.
For PD-L1 evaluation, three representative images were obtained through Leica DM IRE2 microscope combined with Leica CCD camera DFC420. The combination of intensity and area of positive PD-L1 staining were calculated as the PD-L1 density.
+ Open protocol
+ Expand
3

Paraffin-embedded Tissue Immunohistochemistry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded tissue sections were deparaffinized at 60°C for 20 min, cleared in xylene, and subjected to a graded series of alcohol. For hematoxylin and eosin (H&E) staining, slides were stained with Mayer’s hematoxylin (Sigma-Aldrich), blued in 0.1% sodium bicarbonate, and counterstained with Eosin Y solution (Sigma-Aldrich). For IHC, the slides were heated with saline sodium citrate (SSC) buffer at 95° to 100°C. After cooling, the slides were blocked with blocking solution (2% goat serum, 2% bovine serum albumin, and 0.05% Tween 20 in PBS) at room temperature and incubated with a primary antibody diluted in blocking solution at 4°C. Endogenous peroxidase activity was quenched with 0.3% H2O2. Slides were incubated with a horseradish peroxidase (HRP)–conjugated secondary antibody (GeneTech) at room temperature, developed with 3,3′-diaminobenzidine substrate (GeneTech), counterstained and blued with hematoxylin, and dehydrated with a graded series of alcohol. The positive staining density was measured using a computerized imaging system composed of a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems Imaging Solutions Ltd.). The H-score scoring system was used, which evaluated staining intensity (0 to 3) and the percentage of positively stained cells (0 to 1), with a final score ranging from 0 to 3.
+ Open protocol
+ Expand
4

Modulation of CXCR4 Expression in MH3924A Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MH3924A cells were cultured on sterile cover glasses (8×8 mm2) for 1 day, then cultured in DMEM with 100 μg/l FK506, or 50 μg/l AMD3100, or 100 μg/l FK506 + 50 μg/l AMD3100. When the cover glasses were covered with cells, the morphologic changes of MH3924A cells were observed with SEM, while a number of cover glasses were used for the immunohistochemical assay to determine the expression of CXCR4. This assay was performed using the anti-CXCR4 antibody (1:100 dilution; Wuhan Boshide Biotechnology Co., Wuhan, China) as the primary antibody and a horseradish peroxidase-conjugated secondary antibody (1:100; DakoCytomation, Glostrup, Denmark). The formed immunocomplex was visualized using the 3,3′-diaminobenzidine (DAB) reagent. The level of CXCR4 was quantified by a computer-assisted image system, which included a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems, Wetzlar, Germany) (23 (link),24 (link)). Image analysis yielded integrated optical density (IOD) values.
+ Open protocol
+ Expand
5

Immunohistochemical Staining and Image Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
We prepared the application fluid and filtered it according to the kit manufacturer’s instructions. The frozen slices stored in the refrigerator at -80 °C in advance were placed at room temperature for 10 min, then stained with reagent one for 15 min and washed with distilled water at 37 °C for 20 s. After that, they were stained again with reagent two for 3-5 min and washed with distilled water at 37 °C for 30 s. Subsequently, we added the water-based sealant to the surface before drying. The slices were observed and photographed under microscope and analyzed by Image-Pro Plus v6.0 software with integral optic density (IOD) value[17 (link)]. For measuring IOD, the image system comprised a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems Imaging Solutions Ltd, Cambridge, United Kingdom). Photographs of representative fields were captured under high-power magnification (× 200) with Leica QWin Plus v3 software. The IOD value of each image was measured with Image-Pro Plus v6.0 software (Media Cybernetics Inc, Bethesda, MD, United States).
+ Open protocol
+ Expand
6

Tissue Microarray Construction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
A tissue microarray (TMA) was constructed as described previously [25] . Brie y, two cores were taken from each representative tumor tissue and from peritumoral liver tissue (in collaboration with Shanghai Biochip Company Ltd, Shanghai, China). Duplicate cylinders from two different areas, intratumoral and peritumoral (a total of four punches for each patient), were obtained. The rabbit anti-plakoglobin (Cat. No. A303-718A, CST) was used in the immunochemistry to investigate the expression. The density of positive staining was measured with the use of a computerized image system composed of a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems Imaging Solutions Ltd, Cambridge, United Kingdom).
+ Open protocol
+ Expand
7

Immunohistochemical Analysis of VHL and Twist1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections were deparaffinized twice by xylene and then hydrated. Hydrogen peroxide (0.6%) was used to eliminate endogenous peroxidase activity. The sections were blocked with goat serum in Tris-buffered saline for 30 min. Sections were then incubated with anti-VHL antibody (Abcam, 1:100) and anti-Twist1 antibody (Abcam, 1:500) overnight at 4 °C. Secondary antibody was then applied and incubated at 37 °C for 1 hour. Sections were developed with diaminobenzidine and stopped with water. Photographs of representative fields were captured using a Leica CCD camera DFC420 connected to a Leica DMIRE2 microscope (Leica Microsystems Imaging Solutions, Cambridge, UK). Quantification of immunoreactivity was performed on digitally captured color images saved as TIFF files and analyzed using Image-Pro plus 6.0 (Media Cybernetics, Rockville, Maryland, USA). These methods were performed in accordance with the approved guidelines and regulations from the Research Ethics Committee of Huashan Hospital, Fudan University.
+ Open protocol
+ Expand
8

Quantitative Immunohistochemical Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The density of positive staining was measured using a computerized image system composed of a Leica CCD camera DFC420 (Leica Microsystems Imaging Solutions, Ltd., Cambridge, UK) connected to a Leica DM4000 B microscope (Leica Microsystems Imaging Solutions, Ltd.). Five representative fields were selected, and consecutive pictures were captured by Leica QWin Plus v3 software under 20 × objective lens (Leica Microsystems Imaging Solutions, N Plan) at a setting identical to the imaging system for analysing. We used the same setting for all slides. The integrated optical density of all ADAMTS-13-, HMGB1-, GR-, Cu/Zn SOD-, and 8-OHdG-positive staining were measured, and the mean ADAMTS-13-, HMGB1-, GR-, Cu/Zn SOD-, and 8-OHdG-positive area/total area was calculated by Leica QWin Plus v3. All images were collected under the same lighting conditions. To avoid observer bias, a blinded investigator quantified all sections. Data were described in terms of mean and standard deviation (mean ± SD) for area %. After calculating the proportion (% pixels) of the stained area to the whole field, each slide's mean (% pixels) staining area was determined. ADAMTS-13, HMGB1, GR, Cu/Zn SOD and 8-OHdG immunohistochemical results were compared between groups using a one-way analysis of variance and Tukey's multiple comparison tests. P < 0.005 was considered statistically significant.
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of IL-6 in Orthotopic Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical staining was performed as previously described (29 (link)). Paraffin-embedded orthotopically implanted tumors were cut into 5-µm sections and then deparaffinized and rehydrated. Immunohistochemical staining was performed using the Ultra Vision Quanto Detection HRP DAB System (cat. no. TL-015-QHD; Thermo Fisher Scientific, Inc.), following the manufacturer's instructions. Briefly, the slices from orthotopically implanted tumors were treated with a diluted primary antibody against IL-6 (1:100; cat. no. NB600-1131; Novus Biologicals) at 4°C overnight and anti-rabbit/mouse secondary antibodies (included in the Ultra Vision Quanto Detection HRP DAB System) at room temperature for 60 min. Signals were detected by DAB at room temperature for 5 min. Immunohistochemical images were recorded using a computerized image system composed of a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems, Inc.). The total positive staining area of IL-6 was calculated by Image-Pro Plus v6.2 software (Media Cybernetics, Inc.).
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of UTP11 in Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded sections of breast or colorectal cancer tissues were deparaffinized at 65 °C for 1–2 h and then subjected to xylene and a graded series of alcohol. Following that, the slides were heated with Sodium citrate-EDTA antigen repair solution (cat. No. P0086, Beyotime) for antigen unmasking. After cooling, the slides were incubated for 1–2 h with primary antibodies at room temperature. The sections were then covered with horseradish peroxidase (HRP)-conjugated secondary antibody (cat. No. GK500705, GeneTech) at RT for 30–60 m and incubated with 3′-diaminobenzidine (cat. No. GK500705, GeneTech) for 5 m. Subsequently, the slides were counterstained with hematoxylin, dehydrated with a graded series of alcohols, and mounted with coverslips and mounting medium. The staining density was measured using a Leica CCD camera DFC420 connected to a Leica DM IRE2 microscope (Leica Microsystems Imaging Solutions Ltd.). The IHC scores were measured by multiplying staining intensity (0 = no, 1 = weak, 2 = moderate, 3 = strong) with percentage of positive staining (0 = negative, 1 ≤ 10%, 2 = 10–50%, 3 ≥ 50%). UTP11 was defined as low expression when IHC scores were ≤4, and as high expression when IHC scores were >4.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!