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2 protocols using cm1950 cryostat

1

Immunohistochemistry of Mouse Brain Cryosections

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For immunohistochemistry of brain cryosections, mice at post-natal day (PND) 14 and PND 60 from all experimental groups were euthanized with carbon dioxide and their brains were fixed overnight at room temperature in 4% paraformaldehyde. The brains were saturated with ascending amount of sucrose (10% – 20% – 30%, 12 hours each step), snap frozen in optimal cutting temperature (OCT) media and kept at −80°C until they were sectioned. Brains were cut using Leica CM1950 cryostat and mounted on positive charged slides (Fischer Scientific). For immunohistochemical staining, the slides were washed with PBS, which was followed by incubation in 1% hydrogen peroxide for 30 minutes to inactivate the endogenous peroxidase, and then incubated in PBS solution containing 0.05% Triton X-100 and 5% normal goat serum (Invitrogen, Carlsbad, CA) for 30 minutes. The brain tissue was incubated with the following antibodies: rabbit anti-Iba1 for microglia (Wako Chemicals, Richmond, VA), mouse anti-GFAP for astrocytes (Sigma-Aldrich, St Louis, MO), anti-NeuN for neurons (EMD Millipore, Billerica, MA), anti-Myelin basic protein (Abcam, Cambridge, MA). The slides were mounted with Prolong gold antifade reagent as mounting medium (Invitrogen, Carlsbad, CA) and viewed using a confocal Zeiss LSM-510 or Zeiss Axioplan 2 microscope.
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2

Laser Capture Microdissection and Whole Genome Amplification

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Sections of PFC were cut at 8 μm thick onto Arcturus HistoGene Slides at −20°C for LCM on a Leica CM 1950 Cryostat after being embedded in M1 Embedding Matrix (Thermo Scientific). Staining of the slides was done with the Arcturus HistoGene Frozen Section Staining Kit (Life Technologies) using the manufacturer protocol. Laser Capture Microdissection was performed on an Arcturus PixCell IIe with CapSure HS LCM caps. Capturing was done at 20× optics using a 15 μm spot size. The target parameter was set to 0.200 V with a power of 35 mW and a duration of 0.7 ms. Ten cells of a specific type were captured per cap followed by lysis directly on the cap. Whole genome amplification was performed using a user-developed protocol of the Repli-g Mini Kit (Qiagen) with a 16 hour amplification time. DNA clean up was done using the QIAmp DNA Micro Kit (Qiagen) and quantified using Quant-iT PicoGreen dsDNA Assay Kit (Life Technologies). Deletion validation PCR was done using 100 ng template material.
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