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11 protocols using ampkβ1

1

AMPK Pathway Protein Detection

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ACC (catalog no.: 3676), phospho-ACC1 (Ser79; catalog no.: 3661), AMPKα (catalog no.: 2532), phospho-AMPKα (Thr172; catalog no.: 2535), AMPKβ1 (catalog no.: 4178), Raptor (catalog no.: 2280), phospho-Raptor (S792; catalog no.: 2083), AMPKβ1 (catalog no.: 12063), AMPKβ2 (catalog no.: 4148), and AMPKβ1/2 (catalog no.: 4150) were obtained from Cell Signaling Technology. Antibody against AMPKγ1 (catalog no.: ab32508) was purchased from Abcam, and tubulin (catalog no.: T6074), FLAG (catalog no.: F7425), and β-actin (catalog no.: A2228) were purchased from MilliporeSigma. HTRF assay for detection of phospho-ACC was obtained from Cisbio (catalog no.: 64ACCPET).
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2

Protein Analysis and Genetic Manipulation

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The antibodies against β-actin, total AMPKα, and AMPKβ1 were purchased from Cell Signaling Technology (Danvers, USA), and anti-AMPKβ2 antibody was from Abcam (Cambridge, UK). Lipofectamine 3000 reagents were from Thermo Scientific (Waltham, USA). Glycolysis and Cell Mito Stress Test kits were from Agilent (Santa Clara, USA). Gibson Assembly Cloning kit was purchased from New England Biolabs (Ipswich, USA) to construct the guide RNA plasmid of AMPKβ1 and AMPKβ2 subunits.
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3

Murine Hepatocyte Protein Signaling

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Primary hepatocytes were isolated from two male C57BL/6 mice using methods described elsewhere (60 (link)) and plated in 6-well collagen I-coated plates at a density of 3 × 105 cells/well in Williams’ E medium containing 10% fetal bovine serum. Primary hepatocytes were serum-starved in plain William's E medium for 2 h prior to treatment with a DMSO vehicle control or 4-HPAA (TCI America Product No. H0290) for 30 min. Cell pellets or whole liver homogenates were prepared from primary hepatocytes or murine liver, respectively, in a modified RIPA buffer with protease and phosphatase inhibitors. Western blotting was performed as previously described (61 (link)). Images were captured using a GE Amhersham Imager 6000, and the accompanying software (version 1,1.1) was used for densitometric protein expression analysis. Primary antibodies (pS79-ACC, Cell Signaling, #11818; ACC, Cell Signaling, #3676; pT172-AMPKα, Cell Signaling, #2535; AMPKα, Cell Signaling, #5831; pS182-AMPKβ1, Cell Signaling, #4186; AMPKβ1, Cell Signaling, #4178) were prepared 1:1,000 in TBST buffer with 5% (w/v) BSA. Rabbit secondary (Cell Signaling, #7074) and β-actin (Cell Signaling, #12620) antibodies were prepared 1:5,000 in TBST with 5% (w/v) nonfat dried milk.
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4

Immunoblotting Analysis of Muscle-Related Proteins

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Tissue extracts were prepared in radioimmunoprecipitation assay (RIPA) buffer (Cell Signaling Technology, USA). The resulting preparations (10 to 20 μg) were then fractionated by polyacrylamide-SDS gel electrophoresis and immunoblotted with SIRT-1 (sc-15404), PGC-1β (sc-373771), ATP5B (sc-55597), MuRF1 (sc-32920), MAFbx (sc-33782), tropomyosin (sc-28543), MYH (sc-20641), hypoxanthine phosphoribosyltransferase (HPRT) (sc-20975), NOX2 (gp91-phox) (sc-130543), and β-actin (47778) from Santa Cruz Biotechnology, Inc., USA; with UCP-3 (catalog no. 97000), pAMPKβ1 (Ser182) (catalog no. 4186), and AMPKβ1 (catalog no. 4150) from Cell Signaling Technology, USA; with ATG5 (NBP2-24389) and LC3B (NB100-2220) from Novus Biologicals, USA; and with anti-SQSTM1/p62 (catalog no. ab56416) from Abcam, USA. The primary and secondary antibodies were used at dilutions of 1:1,000 and 1:10,000, respectively. The blots were visualized with SuperSignal West Pico chemiluminescent substrate (Thermo Scientific, Rockford, IL, USA), according to the manufacturer’s instructions. The immunoreactive bands were analyzed using ImageJ software, and a densitometry analysis was conducted.
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5

Cucurbitacin E Mediated Autophagy Regulation

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Cucurbitacin E was obtained from Shanghai Shunbo Chempharm Co (Shanghai, China). Chloroquine (CQ), dimethylsulfoxide (DMSO) and sodium dodecyl sulfate (SDS), polyformaldehyde were from Sigma-Aldrich (St. Louis, MO, USA). WST-1 was from Roche (Penzberg, Germany). Lipofectamine RNAiMAX, Dulbecco's modified Eagle's medium (DMEM), penicillin, streptomycin, L-glutamine, and fetal bovine serum (FBS) were from Gibco/ Invitrogen (Carlsbad, CA, USA). Polyvinylidene difluoride (PVDF) membranes (Hybond-P) were obtained from GE Healthcare Life Sciences (Piscataway, NJ, USA). Antibodies against p-p70S6KT389, p70S6K, p-4E-BP1T37/46, 4E-BP1, p-S6S235/236, S6, p62/SQSTM1, LC3B, ATG5, Beclin 1, p-AKTS473, p-AktT308, Akt, p-AMPKαT172, AMPKα, p-AMPKβ1S108, AMPKβ1, p-ULK1S758, p-ULK1S555, ULK1, p-RaptorS792, Raptor, β-tubulin and HRP-conjugated second antibody were obtained from Cell Signaling Technology (Danvers, MA, USA). The antibody against LAMP2 was obtained from Abcam (Cambridge, MA, USA).
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6

Comprehensive Immunoblotting Antibody Protocol

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Phospho-AMPKα (1:1000, Thr 172) (2535), AMPKα (1:1000, 2603), AMPKα1 (1:1000, 2795), AMPKα2 (1:1000, 2757), AMPKβ1 (1:1000, 4178), AMPKγ1 (1:1000, 4187), phospho-ACC (1:1000, 3661), ACC (1:1000, 3676), phospho-AKT (1:1000, Ser 473) (9271) and AKT1 (1:2000, 2967) antibodies were acquired from Cell Signaling Technology (Danvers, MA, USA). The UCP1 antibody (1:1000, ab10983) and mouse AMPKα1 (1:1000, ab3759) were procured from Abcam (Cambridge, MA, USA). Mouse AMPKα2 (1:1000, AF2850) was purchased from R&D systems Inc. (MN, USA). FLAG (1:3000, F3165 and F7425) and β-actin (1:10000, A5316) antibodies were procured from Sigma-Aldrich. The MKRN1 antibody (1:3000, A300-990A) was procured from Bethyl Laboratories. The mono- and polyubiquitin chain antibodies (1:1000, FK2, Biomol, PW0150) were purchased from Enzo Life Sciences. The HA antibody (1:3000, 12013819001) was obtained from Roche. GAPDH (1:5000, sc-25778), GFP (1:5000, sc-8334) and HA (hemagglutinin) (1:3000, sc-7392 and sc-805) antibodies were procured from Santa Cruz Biotechnology (Dallas, TX, USA). MG132 (M-1157) was purchased from A.G. Scientific (CA, USA). CHX (C4859) was purchased from Sigma-Aldrich.
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7

Immunoprecipitation and Immunoblotting Protocol

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For immunoprecipitation, cells were lysed in IP buffer (150mM NaCl, 50mM Tris pH7.5, 1% Triton X-100) clarified by centrifugation at 14,000 rpm for 15 minutes, then incubated with primary antibody for 2 hours and then incubated with Protein A-Agarose beads (Roche) for 30 min before washing in IP buffer 3 times. Protein samples for immunoblotting were lysed in 1x Lamelli buffer and subjected to SDS-PAGE with a tris-glycine buffer system. Rabbit antibodies against phospho-GSK3β(S9), phospho-S6K(T389), S6K, phospho-AKT(T308), phospho-AKT(T473), AKT, phospho-AMPKα(T172), AMPKα, AMPK β1, phospho-ACC1, ACC1, phospho-TBC1D1(S700), TBC1D1, HSP90, YAP, TSC1, and Rpl26 were from Cell Signaling. PPARα antibody (3B6/PPAR) was purchased from Alexis (Now part of Enzo life sciences). LXRα/β was from Santa Cruz. Mouse antibody anti-SREBP-1 was from BD Biosciences. Anti-HA antibody was from Roche. Anti-FLAG(M2) was from Sigma. Monoclonal mouse anti-Actin was from Developmental Studies Hybridoma Bank. Anti-PPP2R5C was generated by immunizing guinea pigs with NCBI Variant 3 of mouse PPP2R5C.
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8

Immunoblotting Analysis of Hippocampal Proteins

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The protein lysates from the hippocampi of WT or Trpm2−/− mice were prepared in a RIPA cell lysis buffer (GenDEPOT), containing a protease inhibitor cocktail (Roche). These lysates were then subjected to an 8% SDS-PAGE gel. The proteins were transferred to PVDF membranes and then treated for 1 h with a TBS-T solution (20 mM of Tris/HCl, 500 mM of NaCl, 0.1% Tween 20), containing 2–5% skimmed milk powder. They were incubated with primary antibodies against β-actin (Sigma), α-tubulin (Millipore), GAPDH (Santa Cruz), calnexin (Santa Cruz), EEA-1 (Abcam), LAMP-1 (Santa Cruz), or autophagy-related proteins (LC3B:#2755, mTOR: #2972, phospho-mTOR: #5536, Raptor:#2280, AMPKα: #2532, phospho-AMPKα: #2531, AMPKβ1: #12063, phospho-AMPKβ1: #4181, ULK1: #8054, phospho-ULK1 (Ser555): #5869, phospho-ULK1 (Ser757): #14202, from Cell Signaling) at 4 °C on a rotary shaker overnight. The membranes were washed three times in a TBS-T solution, incubated with a secondary antibody for 1 h, and then treated with WEST-ZOL® ECL solution (iNtRON biotech). Blots were analyzed using an ImageQuant™ LAS 4000 chemiluminescence (GE Healthcare).
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9

Western Blot Analysis of AMPK Pathway

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Whole-cell lysates were resolved by SDS-PAGE gel electrophoresis, electrotransferred to a PVDF membrane, and probed with indicated antibodies. The following antibodies were purchased from Cell Signaling Technology: AMPKα1 (#2795), AMPKα2 (#2757), Phospho-AMPKα (Thr172) (#2535), AMPKβ1 (#4178), AMPKβ2 (#4148), AMPKγ1 (#4187), AMPKγ2, (#2536), AMPKγ3 (#2550), Acetyl-CoA Carboxylase (#3676), Phospho-Acetyl-CoA Carboxylase (Ser79) (#3661), cleaved Caspase-3 (Asp175) (#9661 and #9664), E-cadherin (#3195), Gasdermin D (#97558 and #93709), and cleaved Gasdermin D (Asp275) (#36425).
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10

AMPK and PP1 Co-Immunoprecipitation

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For co-immunoprecipitation (Co-IP) of AMPK and PP1, HeLa cells were transfected with a total of 25μg pcDNA-His-PP1-H248K and pcDNA-AMPKβ1 using the Turbofect lipofection reagent (Thermofisher) and Optimem serum-free medium (Gibco). Cells were lysed 48 h after transfection (50 mM Tris pH 7.5, 500 mM NaCl, 1% NP-40, 0.1% SDS, and freshly supplemented protease inhibitor cocktail), spinned for 10 min at 10,000 g and immediately diluted with 1x TBS after taking aliquots for input and protein concentration measurement using the Pierce BCA assay. Co-IP was performed by the addition of 2μg of the respective antibody (6x-His Tag HIS.H8 MA1-21315 from Invitrogen, control IgG from Santa Cruz Biotechnology or AMPKβ1 from Cell Signaling) for 1 h, followed by the addition of Protein A/G Plus beads (Santa Cruz Biotechnology) for another 2.5 h. Beads were then washed multiple times over spin columns, followed by elution by boiling in SDS-PAGE loading dye for 5 min. Light-chain-specific secondary HRP-conjugated antibodies (Santa Cruz Biotechnology) were used for the ensuing Western Blot detection.
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