The largest database of trusted experimental protocols

101 protocols using infinite f200 pro plate reader

1

Quantification of Cell-free DNA and Nucleosomes in r-axSpA

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify circulating cell-free DNA, 10 μL of plasma from r-axSpA patients and HDs was placed into 96-well black microplate and stained with 1 μM Sytox green dye (Sytox Green Nucleic Acid Stain, Invitrogen) in Tris-buffered saline [TBS (50 mM Tris-Cl, pH 7.5 and 150 mM NaCl)] at RT for 15 min in the dark. Next, plates were read in Infinite F200® Pro plate reader (Tecan Group Ltd) with a filter setting of 485 (excitation)/528 (emission). The data were analysed using a serial dilution of DNA from salmon as calibration curve.
Nucleosomes were measured by using the Human Cell Death Detection ELISAPLUS (Roche Diagnostics) according to the manufacturer’s instructions. Briefly, monoclonal antibodies against DNA (double and single strand) and histones (H1, H2A, H2B, H3 and H4) were used to detect mono- and oligo-nucleosomes in serum from r-axSpA patients and HDs. Quantification of nucleosomes was carried out by photometric determination of the absorbance at 405 nm (reference wavelength: 492 nm). Neutrophil elastase was measured by PMN Elastase Human ELISA kit (Abcam) in serum from r-axSpA patients and HDs following the manufacturer’s recommendations.
+ Open protocol
+ Expand
2

Fitness Cost of EPS and TasA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Since the expression of epsA-O and tapA-sipW-tasA operons strongly depend on cultivation conditions and media composition [24 (link),40 ,52 ,56 (link),57 (link)], we performed the competition experiment for the fitness costs of EPS and TasA production under the same conditions that were later used for the assays that involved pellicles. Strains of interest were premixed at 1:1 ratios based on their OD600 values and the mixture was inoculated into MSgg medium at 1%. Cultures were grown under static conditions at 30°C. CFU assays (using selective antibiotics for the Δeps and ΔtasA strains) were performed immediately after inoculation and after 16 hours of growth. The growth curves obtained at the initial stage of pellicle formation were performed under standard pellicle growth conditions in 96-well plates. The optical densities and GFP-fluorescence were monitored using an infinite F200PRO plate reader (TECAN Group Ltd, Männedorf, Switzerland).
+ Open protocol
+ Expand
3

Antioxidant Potential of Pineapple Byproducts

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antioxidant potential of the pineapple peel, crown and core extracts was determined based on DPPH free radical scavenging assay as previously described [14 ]. Before the analysis, 3000 µg/mL of stock sample was prepared. The assay was conducted in a 96-well microplate with 50 µL of the test samples prepared in 7 serial dilutions starting with 1000 µg/mL in the well. An aliquot of 100 µL of 0.15 mM DPPH was then added into the well. For the blank sample, 100 µL of methanol was added to obtain accurate sample absorbance. The plate was then incubated for 30 min before measuring the absorbance at 517 nm against the reagent blank by Tecan Infinite F200 Pro plate reader (Tecan Group Ltd., Männedorf, Switzerland). The analysis was performed in triplicate. The same procedure was applied for quercetin which acts as a positive control. The scavenging capacity of the test sample was calculated as the percentage of DPPH inhibition (%) = [(Ao − As)/Ao] × 100 where Ao indicated the absorbance of the reagent blank and As indicated the absorbance of the test samples. The results were expressed in IC50 value (µg/mL), which denotes the concentration of sample required to scavenge 50% DPPH free radicals.
+ Open protocol
+ Expand
4

Quantifying Extracellular Vesicle Procoagulant Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ect concentration was determined by performing Zymuphen MP Activity assay based on the procoagulant activity of the human plasma (through thrombin generation) by using a manual method (cat. no. 521096; Hyphen BioMed SAS, Neuville sur Oise, France), and was expressed as MP concentration (in nM). The assay was developed in an end-point mode. Absorbance was measured at 405 nm, with a reference wavelength of 690 nm, by using Infinite F200 Pro plate reader (Tecan Group Ltd., Männedorf, Switzerland) at 3 min after substrate introduction at 37 °C and reaction termination. The detection threshold was set at <0.05 nM, and intra-assay variability was set at <8%.
+ Open protocol
+ Expand
5

Fluorescence-based Assay for sEH IC50 Determination

Check if the same lab product or an alternative is used in the 5 most similar protocols
For determination of IC50 values of recombinant human sEH a 96-well fluorescence-based assay system was used as described before (Blöcher et al., 2016a (link)). In brief, non-fluorescent PHOME (3 phenylcyano-(6-methoxy-2-naphthalenyl)methyl ester 2-oxiraneacetic acid, Cayman Chemicals, Ann Arbor, MI, United States) was used as substrate, which is hydrolyzed by sEH to the fluorescent 6-methoxynaphthaldehyde (Rau et al., 2006 (link)). The formation of the fluorescent product was measured (λem = 330 nm, λex = 465 nm) by an Infinite F200 Pro plate reader (Tecan Group Ltd., Männedorf, Switzerland). For that purpose, 2 μg recombinant human sEH in 100 μl bis-Tris buffer (pH 7, 0.1 mg/mL BSA, 0.01% Triton-X 100) was applied per well. This protein solution was then incubated with different concentrations of the test compounds for 30 min at RT. After this, 10 μL of the substrate were added (final concentration 50 μM). The formation of 6-methoxynaphthaldehyde was monitored for 30 min. All concentrations were tested in triplicate wells.
+ Open protocol
+ Expand
6

Nitric Oxide Scavenging Assay for Antioxidant Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The nitric oxide (NO) free radical scavenging assay was conducted according to Abdul-Hamid et al. [41 (link)], with some modifications. Basically, 1 mg of OPL extract was weighed and transferred into 1 mL of dimethyl sulfoxide (DMSO), followed by dilution with DMSO to reach final concentrations ranging from 0.98 to 1000 µg∙mL−1. A 60-µL aliquot of the test solution was mixed with 60 µL of sodium nitroprusside (0.05236 g dissolved in 20 mL of 10 mM phosphate buffer saline), mixed well and incubated at 298 K for 150 min. After incubation, 60 µL of Griess reagent (a mixture of 0.1 g of sulfanilamide, 0.01 g of N-(1-naphthyl) ethylenediamine dihydrochloride, and 10 mL of 2.5% phosphoric acid) was added into the reaction mixture, and the absorbance was measured at 550 nm using a Tecan Infinite F200 Pro plate reader (Tecan Group Ltd., Männedorf, Switzerland). Quercetin was used as a positive control in the assay. Scavenging activity (SA) was calculated according to the equation 11.
The assay was carried out in triplicate, and results were stated as IC50 value in µg∙mL−1. Quercetin was used as a positive control in the assay.
+ Open protocol
+ Expand
7

Bacillus subtilis Growth Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Overnight cultures of B. subtilis strains were diluted 100-fold in 2×SG medium supplemented with different amounts of Ca(NO3)2; 200 μL aliquots of the culture were placed in the wells of a 96-well plate and incubated under shaken conditions at 30 °C. Growth and fluorescence intensity were recorded every 15 min using an infinite F200PRO plate reader (TECAN Group Ltd., Männedorf, Switzerland).
+ Open protocol
+ Expand
8

Quantification of Biofilm Biomass

Check if the same lab product or an alternative is used in the 5 most similar protocols
Filtered crystal violet (CV [Fisher, UK]) was prepared to a 0.1% w/v solution in deionised water (dH2O). At the experimental end time point the nanovibrational stimulation apparatus was removed from the incubator and the Petri dishes detached from the aluminium support discs. Once detached the supernatants were aspirated and the biofilm was washed twice with 1x PBS to remove non-adherent cells. One millilitre of 0.1% w/v CV was added to each Petri dish including the media-only control. Petri dishes were then incubated at room temperature for 15 min. Excess CV stain was removed by washing in dH2O until subsequent washes did not remove any further excess staining. To quantify the bound CV, 80% v/v ethanol was added, and Petri dishes gently rocked to allow full solubilisation of the bound CV. This procedure was repeated for all experimental conditions, controls and media only control. To a 96 multi-well plate (Corning, UK), 100 µl of the solubilised CV was transferred from the Petri dish in triplicate. The 96 multi-well plate was then read at OD595nm using an Infinite F200 Pro plate reader (Tecan Group Ltd, Switzerland).
+ Open protocol
+ Expand
9

Fluorescence Measurement of Lysine Riboswitch

Check if the same lab product or an alternative is used in the 5 most similar protocols
The fluorescence levels of cells containing the lys-riboswitch or the promoter-GFP-fusion constructs were measured by transferring 200 µl of the culture into a black 96-microwell plate (Nunc, Denmark) and inserting the plate into a Tecan Infinite F200 Pro platereader (Tecan Group Ltd, Switzerland). The plate was shaken for 5 seconds prior to excitation at 488 nm followed by emission detection at 536 nm. Fluorescence values were always recorded together with a cognate control measurement. In case of the lys-riboswitch, the uninduced plasmid-containing culture served this purpose, while in case of the promoter fusion constructs, the promoter-less plasmid (pUA66) was used as control.
+ Open protocol
+ Expand
10

Fluorescence-based Viability and Doxorubicin Retention Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
1×104 cells were plated per well in 96-well round bottom polystyrene dishes and allowed to adhere for 16 hours before treatment with vehicle or drug. IWR-1-endo (Calbiochem, San Diego, CA, USA) or verapamil (Sigma-Aldrich, St. Louis, MO, USA) were added to the wells for 16 hours (IWR-1-endo) or 15 minutes (verapamil). After treatment, Calcein AM (Thermo-Fisher, Waltham, MA, USA) was reconstituted in DPBS and added to each well to reach a final dilution of 1:3000 (333nM), and incubated at 37ºC for 30 minutes. For doxorubicin retention assays, following treatment with IWR-1, doxorubicin was added to each well to reach a final concentration of 10µM, and incubated at 37ºC for 2 hours. Solutions were then removed, wells were rinsed with DPBS, and total fluorescent emission in each well was measured with a TECAN Infinite F200 Pro plate reader (Tecan, Zurich, Switzerland).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!