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39 protocols using planapon

1

Picosecond Laser FLIM Imaging of o-BMVC

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The setup of the FLIM system consisted of a picosecond diode laser (laser power, 5 mW) with an emission wavelength of 470 nm (LDH470; PicoQuant, Germany) and a ~ 70 ps pulse width for the excitation of o-BMVC under a scanning microscope (IX-71 and FV-300; Olympus, Japan). The fluorescent signal from o-BMVC was collected using a 60 × NA = 1.42 oil-immersion objective (PlanApoN; Olympus, Japan), passed through a 550/88 nm bandpass filter (Semrock, USA), and detected using a single-photon avalanche diode (SPAD) (PD-100-CTC; Micro Photon Devices, Italy). The fluorescence lifetime was recorded and analyzed using a time-correlated single-photon counting (TCSPC) module and software (PicoHarp 300 and SymPhoTime v5.3.2; PicoQuant, Germany). FLIM images were constructed from pixel-by-pixel lifetime information.
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2

Live-Cell Imaging of PKA Activation

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Images were acquired on an inverted microscope (IX81, Olympus) with a heated incubator that maintained the chamber at 37 °C and 5% CO2 (WELS, Tokai-Hit). Images were acquired for either 15 or 25 minutes at 1-minute intervals. Drugs were added at the 5-minute and 15-minute point. PKA activation was achieved through treatment with 50 µM forskolin and 100 µM IBMX, unless otherwise noted. For the experiment demonstrating reversibility, the media was replaced with new media containing 40 µM H89 at the 15-minute point, as residual forskolin and IBMX led to an incomplete inhibition of PKA. Images were acquired with a CMOS camera (C11440, Hamamatsu) in a 60x oil objective (Plan Apo N, Olympus) with the appropriate excitation and emission filters driven by a filter wheel controller. Metamorph was used to control the hardware associated with the microscope which includes the motorized stage (MS-2000, Applied Scientific Instrumentation), filter wheels (Lambda 10-3, Sutter Instruments), and LED light source (pE-300, CoolLED). To measure response with the FRET reporter, cells were excited in the CFP channel, and images were acquired in the YFP channel.
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3

Quantitative FLIM Imaging of DNA Structures

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The setup of the FLIM system consisted of a picosecond diode laser (laser power, 5 mW) with an emission wavelength of 470 nm (LDH470; PicoQuant, Germany) and a ~70 ps pulse width for the excitation of o-BMVC under a scanning microscope (IX-71 and FV-300; Olympus, Japan). The fluorescent signal from of o-BMVC was collected using a 60× NA = 1.42 oil-immersion objective (PlanApoN; Olympus, Japan), passing through a 550/88 nm bandpass filter (Semrock, USA), followed by detection using a SPAD (PD-100-CTC; Micro Photon Devices, Italy). The fluorescence lifetime was recorded and analyzed using a time-correlated single-photon counting (TCSPC) module and software (PicoHarp 300 and SymPhoTime v5.3.2; PicoQuant, Germany). FLIM images were constructed from pixel-by-pixel lifetime information.
For the study of fixed cells, cells on coverslip were fixed with 70% ethanol for 10 min and then stained with 5 µM o-BMVC for 10 min at room temperature. For the study of PDS pretreatment, HeLa and MRC-5 cells on coverslip were treated with 1 µM PDS overnight. After washing twice, cells were fixed with 70% ethanol for 10 min and then stained with 5 µM o-BMVC for 10 min at room temperature. For the study of DNase treatment, HeLa cells on coverslips were fixed with 70% ethanol for 10 min and then treated with 20 µg/ml DNase for 1 h at 37 °C followed by 5 µM o-BMVC staining for 10 min.
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4

Electron Microscopy Imaging with Patch Clamp

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Cell imaging was performed using an electron multiplying charge-coupled device camera (ImageM C9100-13, Hamamatsu Photonics) mounted on an inverted epifluorescence microscope equipped with a 60× oil immersion objective lens (Plan ApoN, Olympus), a stable xenon lamp (U-LH75XEAPO, Olympus), and a filter set that included a BP542 (excitation filter), BP620 (emission filter), and DM570 (dichroic mirror; Olympus) along with the patch clamp setup. Image acquisition was controlled by a computer using MetaMorph (Molecular Devices). We obtained phase contrast (exposure time, 100 ms) and fluorescence images (exposure time, 1,000 ms) just before the final approach of the glass pipette to a target cell. All phase contrast images included the target cell and pipette edge (data not shown).
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5

FRET Imaging of Sensor Transduction

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FRET imaging experiments were performed 24–48 h after transduction with adenovirus carrying each sensor, as described before53 (link). Cells were maintained at room temperature in a modified Ringer solution (125 mM NaCl, 20 mM Hepes, 1 mM Na3PO4, 5 mM KCl, 1 mM MgSO4, 5.5 mM glucose, CaCl2 1 mM, pH 7.4). ARVM were imaged 18 h after infection and kept at ∼35 °C in Tyrode solution containing 1.4 mM Ca2+. An inverted microscope (Olympus IX71) with a PlanApoN, 60 × , NA 1.42 oil immersion objective, 0.17/FN 26.5 (Olympus, UK), was used. The microscope was equipped with a CoolSNAP HQ2 (link) monochrome camera (Photometrics) and a DV2 optical beam-splitter (MAG Biosystems, Photometrics). Images were acquired and processed using MetaFluor 7.1, (Meta Imaging Series, Molecular Devices). FRET changes were measured as changes in the background-subtracted 480 nm/545 nm fluorescence emission intensity on excitation at 430 nm and expressed as R/R0, where R is the ratio at time t and R0 is the average ratio of the first 8 frames. FRET imaging experiments with ARVM isolated from MI rats and age-matched controls were performed using an ORCA-ER CCD camera (Hamamatsu Photonics, Welwyn Garden City, UK) attached to an inverted microscope (Nikon TE2000) equipped with a 30 Watt dia-illuminator. The system has an EX436/20 excitation filter combined with DM455 dichroic mirror.
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6

Oleate-induced Pot1-GFP localization

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Pot1-GFP labeled cells growing in mid log phase were transferred to oleate medium. These cells were washed and transferred to starvation medium and split into two batches. Cells were collected after every 30 min and mounted on 2% agarose pad and visualized using Delta vision microscope Olympus 60X/1.42, Plan ApoN.
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7

Immunofluorescence Imaging of Cultured Cells

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Cells were cultured on a glass-bottomed dish and directly observed. For examination by immunofluorescence microscopy, cells grown on gelatin-coated coverslips were fixed with 4% paraformaldehyde, permeabilized using 50 μg/ml digitonin, and then stained with specific antibodies. All images acquired using confocal laser microscope (FV1000D IX81; Olympus), using a 60× PlanApoN oil immersion lens (1.42 numerical aperture; Olympus).
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8

Deconvolution Microscopy Imaging Protocol

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All images were acquired on a Deltavision Core deconvolution microscope (Applied Precision) using a 60× 1.42NA PlanApo N (Olympus) or 100× UPLanSApo 1.4NA (Olympus) objective and a sCMOS camera. Twenty Z-sections with 0.2 μm spacing were acquired for each image with identical exposure conditions within each experiment. For presentation in figures, representative images were deconvolved (where indicated), followed by generation of maximum intensity projections of 5–10 Z-sections, which were scaled identically for all experimental conditions.
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9

Quantifying Synaptic Density and Maturity

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Stained cells were analyzed at a Deltavision imaging system using an Olympus 60X/1.42, Plan Apo N oil immersion objective. Image stacks with a 0.2-μm-step size were acquired and deconvolved using SoftWorX Acquisition and Analysis software. Images were imported into ImageJ using the Bioformats plugin, and colocalization analysis was performed using the Colocalization analysis plugin on image stacks. Total numbers of synapsin puncta were determined as counts of puncta of 0.05- to 1.5-μm2 size and normalized to the length of the tubulin skeleton. Mature synapses were quantified as puncta with colocalization of synapsin 1a/b and PSD-95 and expressed as a ratio of colocalizing puncta compared with the total number of synapsin puncta. Total neurite development was quantified as the area covered by skeletonized β3-tubulin–stained neurites in 3 DIV cultures, normalized to the number of cells per field of view.
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10

High-resolution Microscopy Imaging

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Images were collected with a DeltaVison Elite wide-field microscope system (GE Healthcare) equipped with a scientific CMOS camera, using 60× objective (Olympus; NA = 1.42 PlanApoN) and immersion oil with a refractive index of n = 1.516. A Z-stack was acquired over a 2 µm width with 0.2 µm Z intervals. Images were deconvolved using the DeltaVision algorithm, maximally projected, and analyzed using the Fiji image processing package (ImageJ).
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