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21 protocols using ab137133

1

Comprehensive Western Blot Analysis

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Cells on petri dish were washed with PBS then lysed with 1X SDS-PAGE sample loading buffer diluted from 4X loading buffer (250 mM Tris-HCl pH 6.8; 8% SDS; 0.2% Bromophenol Blue; 20% β-mercaptoethanol; 40% glycerol). Whole cell lysates were heated at 95°C for 5 min and separated by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membrane. Western blotting was conducted by blocking the membranes in 5% non-fat milk then probing with primary antibodies in 5% non-fat milk for 1 h. Membranes were washed extensively with PBST (phosphate buffered saline supplemented with 0.5% Tween 20), then incubated with HRP-conjugated secondary antibodies for 30 min. After extensive wash with PBST, bound HRP-conjugated secondary antibody was detected by enhanced chemiluminescence (ECL). Antibodies against human mTOR (ab2732), mTOR-S2481 (ab137133), S6K1 (ab9366), S6K-T389 (ab2571), RAGC (ab226199), RAB1A (ab241132), RAB5 (ab18211), and Tubulin (ab15568) were purchased from Abcam. Antibody against LC3 (848801) was from BioLegend.
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2

Autophagy Pathway Regulation Assay

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AS-IV (HPLC ≥ 98.81%) and fine particulate matter standards were respectively purchased from Chengdu Munster Company (China) and National Institute of Standards and Technology (USA). 3-Methyladenine (3-MA) was purchased from Selleck, and polyvinylidene fluoride membranes were purchased from Bio-Rad (USA). Antibodies against the following targets were obtained from Abcam (Cambridge, UK): LC3B (ab48394), p62 (ab56416), PI3K (ab182651), Akt (ab185633), p-Akt (ab38449), mTOR (ab2732), p-mTOR (ab137133), Lamin B (ab16048), and GAPDH (ab181602). An antibody against p-PI3K (AF3242) was obtained from Affinity Biosciences (USA). An antibody against p65 (8242S) was obtained from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase (HRP)-labeled goat anti-rabbit IgG secondary antibody (GB23303) and 4°C tissue radioimmunoprecipitation assay lysates were obtained from Servicebio (Wuhan, China).
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3

Western Blot Analysis of Signaling Proteins

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Tissues were homogenized with 5 volumes of radioimmunoprecipitation assay (RIPA) buffer (Solarbio® Life Sciences), and the supernatants were fractionated by SDS–PAGE. The proteins were quantified with a BCA protein quantification kit (Solarbio® Life Sciences), transferred to PVDF membranes (Bio–Rad), and blocked with 5% blocking solution for Western blotting (Roche). The membranes were then exposed to an anti-eNOS antibody (EPR19296) (ab199956, Abcam; dilution: 1/1000), an anti-AMPK alpha 1 + AMPK alpha 2 antibody (EPR19549) (ab207442, Abcam; dilution: 1/1000), a recombinant anti-AMPK alpha 1 (phospho-T183) + AMPK alpha 2 (phospho-T172) antibody (EPR5683) (ab133448, Abcam; dilution: 1/5000); an anti-PGC1 alpha rabbit pAb (#A11971, ABclonal; dilution: 1/1000), an anti-mTOR (phospho-S2448) antibody (EPR426[2 (link)]) (ab109268, Abcam; dilution: 1/5000), an anti-mTOR (phospho-S2481) antibody (EPR427[N]) (ab137133, Abcam; dilution: 1/5000), an anti-adiponectin antibody (EPR17019) (ab181281, Abcam; dilution: 1/1000), and an anti-GAPDH antibody (EPR16891) loading control (ab181602, Abcam; dilution: 1/5000). Immunodetection was conducted using a goat anti-rabbit IgG H&L (HRP) (ab6721, Abcam; dilution: 1/3000) secondary antibody and an enhanced chemiluminescence device (Bio–Rad gel imager).
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4

Protein Expression Analysis in Cell Samples

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Samples were lysed in lysis buffer (Beyotime, Shanghai, China). The loading buffer mixed samples (25 µg protein for each sample) were incubated in boiling water for 10 min. The proteins were separated using sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Massachusetts, USA). Next, the membranes were incubated with the related primary and secondary antibodies. The following antibodies were used: anti-Ki67 (ab92742), anti-EGFR (ab52894), anti-PI3K (ab70912), anti-p-PI3K (ab182651), anti-AKT (ab8805), anti-p-AKT (ab38449), anti-mTOR (ab32028), anti-p-mTOR (ab137133), anti-GAPDH (ab181602), and Goat Anti-Rabbit (ab150077) (all purchased from Abcam, Cambridge, MA, USA). Finally, the proteins were detected using a ChemiDoc XRS imaging system (Bio-Rad, San Francisco, California, USA), with GAPDH as an endogenous reference.
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5

Protein Expression Analysis in Cell Cultures

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LTA (purity of more than 98%) was provided by Sunfull Bio-tech Co., Ltd. (Changsha, China), and L-glutamine (LG, purity than 98%) was supplied by China Pharmaceutical Group Chemical Reagents Co., Ltd. (Shanghai, China).
Antibodies were used against B0AT1, y+LAT1, p-mTOR, p-S6K1, and p-S6 (ab180516, ab236669, ab137133, ab109393, and ab215214, respectively; Abcam, Cambridge, UK), β-actin, EAAT1, EAAT3, CAT-1, 4F2hc, mTOR, S6K1, and S6 (60008-1-Ig, 20785-1-AP, 12686-1-AP, 14195-1-AP, 15193-1-AP, 20657-1-AP, 14485-1-AP, and 14823-1-AP, respectively, Proteintech, IL, USA), and ASCT2 (5345, Cell Signaling Technology, BSN, MA, USA).
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6

Comprehensive Protein Analysis Protocol

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Primary antibody against PCAF (3305, CST), p53 (sc-126, santa cruz), p21 (sc-6246, santa cruz), p16 (sc-166760, santa cruz), Ubiquitin (sc-53509, santa cruz), phosphor-Histone H2A.X(Ser139) (#2577, CST), YAP (#14074, CST), MDM2 (BS-1223, Biogot), phospho-YAP (#13008, CST), TAZ (#83669, CST), phospho-TAZ (#59971, CST), clathrin (ab21679, abcam), caveolae (ab2910, abcam), mTOR (ab2732, abcam), p-mTOR (Ser2448) (ab109268, abcam), p-mTOR(Ser2481) (ab137133, abcam), IL-1β (sc-12742, snata cruz), IL-6 (sc-130326, santa cruz), GAPDH (#AP0063, Biogot), histone H3(BS3718, Biogot), and PA (P0500, Sigma-Aldrich) were purchased commercially.
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7

Analyzing mTOR Expression in Myocardial Tissues

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Myocardial tissues were extracted from the left ventricle, and protein was extracted from the homogenized tissue using precooled RIPA lysis solution (Shanghai Beyotime Institute of Biotechnology, China) supplemented with 1% phenylmethylsulphonyl fluoride (Shanghai Beyotime Institute of Biotechnology, China). The BCA (Beijing Solarbio Science and Technology Co., Ltd., China) method was used to determine protein concentrations. To investigate the expression of mTOR and its phosphorylated protein (p-mTOR) in heart tissues, 50 mg of protein was separated by SDS-PAGE and transferred to PVDF membranes, which were blocked with 5% skim milk. The membranes were incubated with primary antibodies at 4°C overnight. The primary antibodies used were anti-mTOR (1 : 2000, ab137133; ABCAm, United States), anti-phospho-mTOR (1 : 5000, ab109268; ABCAm, United States), anti-GAPDH (K106389P; Beijing Solarbio Science and Technology Co., Ltd., China), and IgG-HRP (SE134; Beijing Solarbio Science and Technology Co., Ltd., China). The membranes were then incubated with the appropriate secondary antibody for 1 h at room temperature and exposed to ECL (Beijing Solarbio Science and Technology Co., Ltd., China) in the darkroom at room temperature.
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8

Western Blot Analysis of HIF1α and mTOR

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For western blotting, proteins were extracted from cultured cells using RIPA buffer containing PMSF (Beyotime). Equal amounts of protein (100 μg) were separated by 7.5%/12.5% SDS‐PAGE and transferred to a PVDF membrane. Primary polyclonal Abs targeting HIF1a (ab92498), REDD1 (ab63059), mTOR Ser2481 (ab137133), mTOR Ser2448 (ab2486), mTOR (ab142349), and GLUT1 (ab652) were purchased from Abcam. The secondary Abs used were anti‐rabbit HRP‐linked (Abcam). The blots were developed using ECL reagent (Millipore). An equal amount of protein loading in each lane was confirmed using the β‐actin Ab. ImageJ software (National Health Institute US) was used to quantify the integrated density of the band.
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9

Western Blot Analysis of Signaling Proteins

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Cells were solubilized in buffer RIPA lysis buffer (Applygen). Protein concentrations were determined by using a bicinchoninic acid assay kit (Pierce Diagnostics). Proteins were separated by 10% (wt/vol) SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore) that were then blocked in 5% (wt/vol) skim milk in Tris-buffered saline with Tween 20 and incubated with the following primary antibodies overnight at 4°C: anti-human TNF-α (1:300, 60291–1-Ig, Proteintech), anti-PI3 kinase p85 (1:200, bs-0128r, Bioss), anti-phospho-PI3 kinase p85 (Tyr458)/p55 (Tyr199) (1:1000, 4228 s, CST), anti-AMPK (1:300, 10929–2-AP, Proteintech), anti-phospho-AMPKα1 (Ser473) (1:800, ab131357, Abcam), anti-mTOR (1:500, 20657–1-AP; Proteintech), anti-phospho-mTOR (S2481) (1:1000, ab137133, Abcam), anti-c-Myc (1:2000, 10828–1-AP, Proteintech), anti-HIF-1α (5 µg/ml, ab1, Abcam), anti-Glut 1 (1:1000, ab652, Abcam), anti-Glut 4 (1µg/ml, ab33780, Abcam), and anti-β-actin (1:5000, 60008–1-Ig, Proteintech). The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies. Detection occurred using chemiluminescent visualization. Quantitative densitometric analysis of the immunoblotted bands was performed using Quantity One (Bio-Rad).
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10

Protein Expression Analysis by Western Blot

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Total protein was extracted utilizing RIPA buffer (Beyotime, China), then the concentration was detected utilizing a BCA protein assay kit (Beyotime, China). The proteins were separated on 10% SDS polyacrylamide gels (Solarbio, China) and afterwards transferred to PVDF membranes (Bio-Rad, USA). Following the blocking with 5% nonfat milk, incubation of blots was done overnight at 4 °C with primary antibodies against FAP (ab207178), PI3K (ab191606), p-PI3K (ab182651), AKT (ab179463), p-AKT (ab192623), mTOR (ab134903), p-mTOR (ab137133) and GADPH (ab181602), which were purchased from Abcam (Cambridge, UK). Enhanced chemiluminescence (ECL) was used to determine the signals when the secondary antibody was incubated.
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