The largest database of trusted experimental protocols

Lunascript rt supermix kit

Manufactured by New England Biolabs
Sourced in United States, United Kingdom, Germany

The LunaScript RT SuperMix Kit is a reagent kit designed for reverse transcription (RT) of RNA to cDNA. The kit includes all the necessary components for efficient and reliable cDNA synthesis.

Automatically generated - may contain errors

291 protocols using lunascript rt supermix kit

1

Isolation and Analysis of RNA from H9 hESCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from H9 hESCs using TRIzol reagent (ThermoFisher Scientific, 15596026). For RT–qPCR, cDNAs were prepared with LunaScript RT SuperMix Kit (NEB, E3010). For CRISPRi experiments, RNA isolation was done using a kit (Monarch, T2040S) followed by reverse transcription using LunaScript RT SuperMix Kit (NEB, E3010), qPCR using qPCRBIO SyGreen Mix Lo-ROX (PCRBio) in LightCycler 480 instrument (Roche). The list of specific primers used is given in Supplementary Table 4. RT–qPCR was done with three independent biological replicates, each of control shRNA and two independent shRNAs targeting MSL3 or relevant empty vector controls and dCAS9 systems for CRISPRi, on a StepOnePlus Real-Time PCR System (Applied Biosystems). Data were normalized to β-actin from three biological replicates.
+ Open protocol
+ Expand
2

RNA Isolation and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using RNeasy Plus Mini kit (QIAGEN) as per the manufacturer’s protocol, subsequently used to generate cDNA with LunaScriptTM RT SuperMix Kit (New England Biolabs). Realtime PCR was performed using SYBR green gene expression assays (New England Biolabs) on a QuantStudio 6 instrument (Applied Biosystems). Gene expressions were normalized to the endogenous GAPDH housekeeping gene. Please refer to Supplemental Data 2.
+ Open protocol
+ Expand
3

Opioid Receptor mRNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA (500 ng) was reverse-transcribed with the LunaScriptTM RT SuperMix Kit (New England Biolabs, E2010) to examine the mRNA expression for avpr1a, oxtr, oprk1, oprm1, and oprd1 RT-qPCR in triplicates (see Supplementary Table 1 for primer sequences) for each subject. Primer specificity was verified by the melt curve analysis. For each primer pair, amplified cDNA was normalized to nicotinamide adenine dinucleotide dehydrogenase (NADH) (Wang et al., 2013 (link); Sailer et al., 2019 (link)). All data were included in the analyses unless statistically defined as an outlier (>2 standard deviations from the mean).
+ Open protocol
+ Expand
4

RNA Isolation and Real-Time PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using RNeasy Plus Mini kit (Qiagen) as per the manufacturer’s protocol, subsequently used to generate cDNA with LunaScriptTM RT SuperMix Kit (New England Biolabs). Real‐time PCR was performed using SYBR green gene expression assays (New England Biolabs) on a QuantStudio 6 instrument (Applied Biosystems). Gene expressions were normalized to the endogenous GAPDH housekeeping gene.
+ Open protocol
+ Expand
5

Quantifying Lipid Metabolism Genes in HSC LX-2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HSC LX-2 cells were lysed by addition of 1 ml TRIzol™ and
incubation at room temperature for 5 min. Phase separation was performed by
addition of 100 μl 1-bromo-3-chloropropane and centrifugation at
12,000 ×g and 4 °C for 15 min. Supernatant
was transferred and total RNA was precipitated by addition of 500 μl
2-propanol and centrifugation at 12,000 ×g and 4
°C for 10 min. RNA was washed twice with 70% ethanol and
centrifugation at 7500 ×g and 4 °C for 5 min.
DNA digestion was performed with DNase I and RNA was reverse-transcribed
into cDNA using LunaScriptTM RT SuperMix kit (New England Biolabs). qPCR was
performed as described previously [27 (link)]. The following primers were used: PNPLA2_forward: 5′-GTG
TCA GAC GGC GAG AAT G -3′; PNPLA2_reverse: 5′- TGG AGG GAG GGA
GGG ATG -3′; LIPE_forward: 5′- CTG CAT AAG GGA TGC TTC TAT GG
-3′; LIPE_reverse: 5′- GCC TGT CTC GTT GCG TTT G -3′;
PNPLA3_forward: 5′- GGC ATC TCT CTT ACC AGA GTG T -3′;
PNPLA3_reverse: 5′- GGC ATC CAC GAC TTC GTC TTT -3′;
ABHD5_-forward: 5′- ACA GAC CTG TCT ATG CTT TTG AC -3′;
ABHD5_reverse: 5′- AGG GCA CAT CTC CAC TCT TCA -3′;
36B4_forward: 5′- GCT TCA TTG TGG GAG CAG ACA -3′;
36B4_reverse: 5`- CAT GGT GTT CTT GCC CAT CAG-3′. Target gene
expression was calculated by the ΔΔCT method. Expression of
ribosomal housekeeping gene 36b4 was used for
normalization.
+ Open protocol
+ Expand
6

Quantifying Lipid Metabolism Genes in HSC LX-2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HSC LX-2 cells were lysed by addition of 1 ml TRIzol™ and
incubation at room temperature for 5 min. Phase separation was performed by
addition of 100 μl 1-bromo-3-chloropropane and centrifugation at
12,000 ×g and 4 °C for 15 min. Supernatant
was transferred and total RNA was precipitated by addition of 500 μl
2-propanol and centrifugation at 12,000 ×g and 4
°C for 10 min. RNA was washed twice with 70% ethanol and
centrifugation at 7500 ×g and 4 °C for 5 min.
DNA digestion was performed with DNase I and RNA was reverse-transcribed
into cDNA using LunaScriptTM RT SuperMix kit (New England Biolabs). qPCR was
performed as described previously [27 (link)]. The following primers were used: PNPLA2_forward: 5′-GTG
TCA GAC GGC GAG AAT G -3′; PNPLA2_reverse: 5′- TGG AGG GAG GGA
GGG ATG -3′; LIPE_forward: 5′- CTG CAT AAG GGA TGC TTC TAT GG
-3′; LIPE_reverse: 5′- GCC TGT CTC GTT GCG TTT G -3′;
PNPLA3_forward: 5′- GGC ATC TCT CTT ACC AGA GTG T -3′;
PNPLA3_reverse: 5′- GGC ATC CAC GAC TTC GTC TTT -3′;
ABHD5_-forward: 5′- ACA GAC CTG TCT ATG CTT TTG AC -3′;
ABHD5_reverse: 5′- AGG GCA CAT CTC CAC TCT TCA -3′;
36B4_forward: 5′- GCT TCA TTG TGG GAG CAG ACA -3′;
36B4_reverse: 5`- CAT GGT GTT CTT GCC CAT CAG-3′. Target gene
expression was calculated by the ΔΔCT method. Expression of
ribosomal housekeeping gene 36b4 was used for
normalization.
+ Open protocol
+ Expand
7

Isolation and Quantification of Total RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was isolated from tissues using the TRI Reagent® solution (Molecular Research center, Cincinnati, OH, USA)—a complete ready-to-use reagent for the isolation of total RNA. Isolation was processed according to the manufacturer’s protocol. For analyzing the quantity and quality of total RNA, NanoDrop 2000 (ThermoFischer, Waltham, Massachussets, USA) was used. RNA after isolation was solubilized in RNA-free water. Samples with RNA were stored at −80 °C. Transcription to cDNA was performed using LunaScriptTM RT SuperMix Kit (New England Biolabs, Ipswitch, MA, USA). cDNA was stored at −20 °C.
+ Open protocol
+ Expand
8

Validating RNA-seq Data Using qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
To validate RNA-seq data, qRT-PCR was performed to quantify the transcription of six selected genes (we randomly selected two upregulated; virC1 and virB11, two downregulated; fdxB and HPG27_526 and two non-differentially expressed genes; lctP and hopC). Total RNA from three independent experiments was obtained and used for qRT-PCR. Primers were designed using Primer-Blast (https://www.ncbi.nlm.nih.gov/tools/primer-blast/) and are listed in Supplementary Table 4. The same amount of total RNA (1 μg/μl) was reverse transcribed using the LunaScriptTM RT SuperMix Kit (NEB) and qPCR reactions were prepared using Luna Universal qPCR Master Mix kit (NEB) The run was performed in ConnectTM Thermal Cycler (Bio-Rad) with the following cycling parameters: 2 min at 95 °C, followed by 39 cycle of 30 s at 95 °C, 30 s at 60 °C, and 30 s at 72 °C. Relative expression of each gene was normalized to that of the 16S gene, whose expression was consistent throughout the different conditions. Quantitative measures were made using the 2−ΔΔCT method61 (link). Three biological replicates and two technical replicates of each condition were performed.
+ Open protocol
+ Expand
9

Fetal Sex Determination via Placental RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
For a subgroup of pregnancies (n = 83 women), placental tissue was available making sex determination possible by following a previously established method [39 (link)]. Briefly, placental tissue was homogenized in RLT Plus Buffer (Qiagen, Venlo, The Netherlands) with 1% β-Mercaptoethanol (v/v, Merck, Darmstat, Germany) in a tissue lyser (MagNa Lyser, Roche, Basel, Switzerland). RNA was isolated with the AllPrep DNA/RNA/miRNA Universal Kit (Qiagen, Hombrechtikon, Switzerland) according to the manufacturer’s instructions. Reverse transcription was performed using the LunaScriptTM RT SuperMix Kit (New England BioLabs, Frankfurt, Germany). TaqMan Universal PCR Master Mix (Life Technologies, Carlsbad, CA, USA) and the primers DDX3Y (FAM labeled) and XIST (VIC labeled) (Life Technologies, DDX3Y: Hs00965254_gH, XIST: Hs01079824_m1) were used for the RT-qPCR (CFX96 Thermocycler, BioRad Laboratories, Hercules, CA, USA). Cycle threshold (Ct) values were generated by the BioRad CFX Manager 3.1 software and fetal sex was determined based on the ΔCt (XIST Ct–DDX3Y Ct).
+ Open protocol
+ Expand
10

Quantitative RT-PCR Analysis of Yeast Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Real-time reverse-transcription PCR (qRT-PCR) analysis was performed to confirm the overexpression of the genes integrated into the genome. The RNAiso Plus Kit (TaKaRa, China) was used for the extraction of total RNA from the harvested yeast cells. The residual genomic DNA in RNA samples was digested by DNaseI (TransGen Biotech, Beijing, China). The cDNA templates were synthesized from the DNaseI treated total RNA using LunaScriptTM RT SuperMix Kit (NEB, China). Then quantitative PCR (qPCR) reactions were performed in a StepOne Plus Real-time PCR System (Applied Biosystems, United States) using Luna Universal qPCR Master Mix (NEB, China). The ACT1 gene was selected as the internal control gene to normalize the amount of the total RNA in different samples. The relative transcriptional level for each gene was determined using the 2–ΔΔCt method (Livak and Schmittgen, 2001 (link)).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!