The largest database of trusted experimental protocols

Paraformaldehyde solution

Manufactured by Biosesang
Sourced in United States, Cameroon

The 4% paraformaldehyde solution is a fixative used in various biological and research applications. It is a clear, colorless liquid that serves as a preservative for tissue samples, cells, and other biological specimens. The solution is designed to maintain the structural integrity and morphology of the samples during processing and analysis.

Automatically generated - may contain errors

15 protocols using paraformaldehyde solution

1

Histopathological and Immunohistochemical Analysis of Murine Liver and Kidney

Check if the same lab product or an alternative is used in the 5 most similar protocols
The order of the procedures for histopathology and immunohistochemistry was as follows: 1) tissue preparation, 2) fixation, 3) dehydration, 4) embedding, and 5) staining.
The liver and kidneys were obtained from the mice and fixed overnight at 25°C in a 4% paraformaldehyde solution (Biosesang, Seoul, Korea). The fixed liver was cut through the caudate and left lateral lobes. The fixed kidneys were transected. The dissected organs underwent tissue processing using a tissue processor (TP1020®; Leica Biosystems, Lincolnshire, IL, USA). The dissected organs were dehydrated through a series of graded ethanol baths to displace water and then infiltrated with wax. The organs were embedded in paraffin using an embedding center (EG1150®; Leica Biosystems). Tissue sections were cut to 4-μm thickness using a microtome (Leica Biosystems) and mounted on poly-l-lysine coated microscopic slides (Mutokagaku, Tokyo, Japan).
+ Open protocol
+ Expand
2

TEM Visualization of Exosomes from Heart Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The exosomes extracted from heart tissues were first prepared for TEM analysis by fixing them with a 0.1% paraformaldehyde solution (Biosesang, Seongnam, Republic of Korea) for 30 min. This step is critical in preserving the structural integrity of the exosomes during the subsequent analysis steps. A 10 μL aliquot of each exosome sample was placed on a piece of Parafilm. A formvar/carbon-supported copper grid (200 mesh; Electron Microscopy Sciences, Hatfield, PA, USA) was then floated on top of each sample drop for 7 min [27 (link)]. This method allowed the exosomes to adhere to the grid while being sufficiently supported for detailed TEM examination. The grid with adhered exosomes underwent a washing procedure, alternating with three drops of ultrapure water, each wash lasting for a 2 min duration. This step ensured the removal of any residual fixing agent. Subsequently, the grid was stained with a 2% solution of phosphotungstic acid (pH 7.0; Sigma-Aldrich, St. Louis, MO, USA) for 30 s, which provided the contrast necessary to visualize the exosomes under TEM. After staining, the grid was air-dried overnight in a dark environment to prevent any light-induced alterations. Once dried, the exosomes were ready for visualization. The prepared samples were examined under a transmission electron microscope (JEM-F200; JEOL, Tokyo, Japan).
+ Open protocol
+ Expand
3

Immunofluorescence Imaging of Co-cultured Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Co-cultured tissues in the device were fixed with 4% (w/v) paraformaldehyde solution (Biosesang, Seongnam, Korea) in PBS (Welgene, Gyeongsan, Korea) for 20 min, followed by permeabilization with a 20 min immersion in 0.15% Triton X-100 (Sigma, St. Louis, MO, USA). The samples were then treated with 3% BSA (Sigma, USA) for 1 h. The cells were incubated with antibodies purchased from Abcam. The primary antibodies were anti-cytokeratin 8 and anti-α-SMA, left for 2 days at room temperature (RT). Alexa Fluor 647 conjugated donkey anti-rabbit IgG (H + L) was used as the secondary antibody. DNA labeling was performed with a 1:250 dilution of Hoechst 33342 (Thermo Scientific, Rockford, IL, USA) for 3 h at RT. Images were collected using a Zeiss LSM 710 confocal laser microscope. The mean fluorescence intensity (MFI) was measured using ImageJ and a fluorescence-intensity analyzer.
+ Open protocol
+ Expand
4

TTC Staining for Myocardial Infarction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Before TTC staining, the isolated heart tissue was perfused with 1X phosphate-buffer saline (PBS; Biosesang, Seongnam, Republic of Korea) several times. Heart tissues from each experimental group were subjected to TTC staining. For this, tissues were incubated in the 1% TTC (Sigma-Aldrich, St. Louis, MO, USA) solution, which was prepared by dissolving TTC in 1X PBS. The incubation was carried out at 37 °C for 1 h in a state shielded from light to prevent photo-degradation [23 (link),24 (link)]. Post-incubation, the tissues were fixed in a 4% paraformaldehyde solution (Biosesang, Seongnam, Republic of Korea) at 4 °C for 4 h. This was followed by sectioning the tissues into 1 mm thick cross-sections for detailed examination. The stained and sectioned heart tissues were then photographed using a digital camera (DIMIS M model, Anyang, Republic of Korea) to document the results of the TTC staining process. The infarcted tissue appears white, while the viable tissue is red. This photographic evidence is crucial for visualizing and analyzing the extent of infarction in heart tissues.
+ Open protocol
+ Expand
5

Hippocampal Neuronal Marker Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The whole brain was fixed in 4% paraformaldehyde solution (BIOSESANG, Seongnam, Gyeonggido, South Korea) and dehydrated in 30% sucrose (Samchun chemicals, Gangnam-gu, Seoul, South Korea) solution. The dehydrated brain was modeled with OCT compound (Leica Biosystems, Wetzlar, Germany) and stored at −70°C. Modeled brains were sectioned into 30 μm sections with a cryostat (Leica Biosystems) at −20°C and attached to glass slides (Paul Marienfeld GmbH & Co., Lauda-Königshofen, Germany). Brain sections were post-fixed with 4% paraformaldehyde solution for 15 min and blocked for 1 h in a blocking buffer (1 × PBS/5% normal goat serum/0.3% Triton X-100). BDNF, pCREB, and NeuN antibodies were diluted 1:500 in antibody dilution buffer (1 × PBS/1% BSA/0.3% Triton X-100) and incubated overnight at 4°C. FITC and Texas red-conjugated secondary antibodies (Invitrogen by life technologies, MA, United States) were incubated for 2 h at room temperature, and longitudinal nuclei were stained with VECTASHIELD® Antifade Mounting Medium with DAPI (Vector Laboratories, Inc. CA, United States). Expressions were analyzed in the dentate gyrus of the hippocampus at 20 × (pCREB) and 40 × (BDNF) magnification. Imaging and IOD measurements were performed using a fluorescence microscope (Nikon Instruments Inc., Tokyo, Japan) and the NIS-Elements program (Nikon Instruments Inc.).
+ Open protocol
+ Expand
6

Eosinophil Detection in Nasal Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Nasal tissues including nasal turbinate and septum were fixed immediately with 4% paraformaldehyde solution (Biosesang, Sungnam, Korea), decalcified with 10% EDTA solution for several days, and embedded in paraffin. Anatomically similar sections of nasal tissues were stained with Sirius Red stain for the detection of eosinophils. This stain protocol was followed as previously described with slight modifications. Briefly, sections were stained with Mayer’s hematoxylin (DAKO, Denmark) for three minutes and rinse in tap water followed by a rinse in absolute ethanol. The sections were placed into alkaline sirius red (Sigma-Aldrich, MO, USA) for 2 hours and rinsed well in tap water. The stained slides were cleared by xylene and mount with permount medium28 (link). A single blinded observer counted eosinophils under a light microscope (×400 magnification) at the inferior turbinate mucosa.
+ Open protocol
+ Expand
7

Monitoring Autophagy and TFEB Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
MEF and DU145 cells stably expressing mRFP-GFP-LC3 were used to monitor the number of LC3-positive puncta and autophagic flux. Nuclear translocation of TFEB was observed in DU145 cells stably expressing GFP-TFEB. Cells on coverslips were fixed with 4% paraformaldehyde solution (Biosesang, Republic of Korea) for 1 h and washed with PBS. Samples were then mounted with mounting medium containing DAPI (Vector Laboratories, USA), and monitored under a confocal microscope (Zeiss LSM700, Germany). To observe TFEB translocation to the nucleus in HADFs, cells on coverslips were fixed with 4% PFA for 1 h and then washed with PBS. Next, the cells were blocked with 10% FBS in PBS, incubated with TFEB antibody (Cell Signaling Technology, USA) overnight, and then incubated with Alexa Fluor 488 secondary antibody (Invitrogen, USA) for 1 h.
+ Open protocol
+ Expand
8

Immunohistochemistry of 3D Dermis Models

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was carried out using cross-sectioned tissues as previously described [33 (link)]. Briefly, Aronia extract-treated 3D dermis models were dehydrated 5 min and then fixed in 4% paraformaldehyde solution (Biosesang, Republic of Korea). Fixed tissues were transferred to frozen section compound (Leica Biosystems, Deutschland) to generate cryomolds. A 20 μm thick sectioned tissue was obtained using a cryotome (CM1860, Leica Biosystems). The cross-sectioned tissues were stained with anti-type I collagen (Abcam, UK) with Alexa® 488-conjugated goat anti-rabbit IgG (Invitrogen, CA, USA). To visualize cell nuclei in tissues, Hoechst 33342 (Invitrogen) staining was applied.
+ Open protocol
+ Expand
9

Immunofluorescence Staining of Cultured Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were grown on sterilized glass coverslips and fixed with 4% paraformaldehyde solution (BIOSESANG, Seongnam, Korea) at 4 °C for 10 min, washed with PBS, and permeabilized with 0.2% Triton X-100 at RT for 20 min. Regarding immunostaining, cells were blocked with 1% bovine serum albumin in PBS for 30 min and stained with a 1 μg of primary antibody in 1% BSA-PBS solution overnight at 4 °C. Then, the cells were labeled with 1:1000 dilution of the appropriate fluorochrome labeled secondary antibodies (Alexa-Fluor-488 or Alexa-Fluor-568 (Invitrogen, Carlsbad, CA, USA)) in PBS at RT for 2 h. Finally, cells were washed three times with PBS and mounted with mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI) (VECTOR laboratories LTD, Peterborough, UK). Images were captured with Carl Zeiss LSM710 confocal microscope (Carl Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
10

Immunofluorescence Staining of Microglia and Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
When the cells reached confluence, they were washed twice with 1× PBS and fixed for 15 min at room temperature with 4% paraformaldehyde solution (Biosesang, Seongnam-si, Korea) and then rinsed twice with phosphate-buffered saline with 0.1% Tween®20 (PBST) twice to remove the excess fixing solution. For permeabilization, the cells were incubated with 0.1% Triton-X 100 in PBST for 15 min at RT and the blocking step was followed by incubation in 3% BSA (BSA 100, Bovogen, Melbourne, VIC, Australia) for 1 h at room temperature. The samples were incubated with CD-86 (Ab239075, Abcam, Cambridge, MA, USA) and CD 206 (Abx140462, Abbexa Ltd., Cambridge, UK), iNOS (PA1-036, ThermoFisher scientific, Seoul, Korea) and TREM-2 (AF1828, R&D System, Minneapolis, MN, USA) for microglia and with pTau (MN1020, ThermoFisher Scientific, Seoul, Korea) and GFAP (AB5541, EDM Millipore, Billerica, MA, USA) for neurons/astrocytes overnight at 4 °C. Next, the samples were washed three times before incubation with secondary antibodies and DAPI for 1h at RT. The samples were washed twice with PBST and the images were captured.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!