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189 protocols using ammonium molybdate

1

Malachite Green and pNPP Assays for MKP7 PTP

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For Malachite green assays, a phospho-p38α MAPK peptide (Asp-Asp-Glu-Met-pThr-Gly-pTyr-Val-Ala-Thr-Arg) was used. Experiments were performed in a 384-well plate in 10 μl solution. Five microliters of MKP7 PTP at 2.5 μM were added to wells with 5 μl of pTpY peptide (p38α MAPK phospho-mimetic) at 100 μM for 30 min at 30 °C. After incubation, 40 μl of Malachite green was added to all wells and incubated at room temperature for 10 min followed by absorbance measurement at 620 nM. Proteins were diluted in a PTP buffer composed of 50 mM Tris pH 7.2, 1 mM EDTA, 0.1% 2-beta-mercaptoethanoll, 0.01% TritonX-100. Malachite green solution was composed of 0.045% Malachite green (Sigma #M-9636) in H2O and filtered through a 0.2 μM unit. Ammonium Molybdate solution consisted of 4.2% Ammonium Molybdate (Sigma A-7302) in 4 M HCl per 100 ml. A 2.5× dilution of the Ammonium Molybdate solution into the Malachite green solution created the working assay Malachite green solution. For pNPP assays, experiments were performed in 384-well plates in 25 μl. Five microliters of MKP7 PTP at 10 μM were added to wells with 20 μL of pNPP solution comprised of 10 mM pNPP, 24 mM Hepes (pH 7.4), 120 mM NaCl, and 5 mM DTT. The reaction mix was incubated at 37 °C for 30 min and was quenched with 75 μl NaOH at a concentration of 0.2 M. The absorbance at 405 nM was taken immediately after terminating the reaction.
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2

Reagents and Materials for Biochemical Assays

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Potassium ferricyanide, ferrous sulfate (II), ethylenediaminetetraAcetic acid (EDTA), gallic acid, ammonium molybdate, hydrogen peroxide 30%, Acetic acid, Folin–Ciocalteu phenol reagent, ethanol, and sulfuric acid were obtained from Merck (Darmstadt, Germany). Nitro blue tetrazolium (NBT), monosaccharides, EDTA, ascorbic acid, methionine, bovine serum albumin (BSA), pyrocatechol violet, ascorbic acid, and ammonium molybdate were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Sodium bicarbonate, culture media components (Minimum essential Dulbecco’s modified Eagle medium (DMEM)), non-essential amino acids, fetal bovine serum, sodium pyruvate, and phosphate buffered saline (PBS) were purchased from Invitrogen Canada Inc. (Burlington, ON, Canada). Acetonitrile (HPLC grade) purchased from Panreac® (São Paulo, Brazil). Acetic acid was provided by Vetec® (São Paulo, Brazil). Water was purified with a Milli-Q system (Millipore®, Bedford, MA, USA). All other solvents and chemicals were of analytical grade.
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3

Antioxidant Potential of Cumin and Clove

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Raw materials; the plants used are cumin seeds (Cuminum cyminum L.) and clove flowers (Syzygium aromaticum L.), which were purchased from local markets spices, Egypt. Chemicals; Ascorbic acid; ferric trichloride; Folin-Ciocalteu; potassium ferricyanide [K3Fe (CN)6], 2,2diphenyl-1-picrylhydrazyl (DPPH); sulphuric acid; sodium phosphate; ammonium molybdate and sodium hydroxide (NaOH); trichloroacetic acid; ammonium molybdate were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA).
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4

Extraction and Quantification of Phytochemicals

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The extraction solvents used, as well as specific chemical reagents, included PBS, Na2CO3 ≥ 99.5% (Cas No.497-19-8), AlCl3, Folin–Ciocalteu (Cat. No 109001), ferric chloride (Cas No.7705-08-0), potassium acetate, quercetin (Cas No.117-39-5), gallic acid (Cas No. 149-91-7), vanillin (Cas No. 121-33-5), sulfuric acid, hydrochloric acid (HCl), sodium phosphate, ammonium molybdate, and DPPH (2,2-diphenyl-1-picrylhydrazyl, Cas No. 1898-66-4), (Sigma-Aldrich, St. Louis, MO, USA). HPLC-grade solvents were procured from Merck (Darmstadt, Germany). Water purification was carried out using the Direct-Q UV system from Millipore, (St. Louis, MO, USA). High-purity standard compounds were used for HPLC, specifically, gallic acid, chlorogenic acid (with 99% HPLC purity), and rutin (with 99% HPLC purity) (Sigma, St. Louis, MO, USA). Various culture mediums were used, including nutrient broth, Baird-Parker agar, TBX agar, XLD agar, Palcam agar, and Muller Hinton agar (Oxoid Ltd., Basingstoke, Hampshire, UK). All chemicals and reagents used in this study met analytical grade standards.
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5

Amino Acid Analysis by UHPLC

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Sulfuric acid, sodium hydroxide, acetonitrile (Ultra high performance liquid chromatography (UHPLC) grade), ethylenediaminetetraacetic acid (EDTA), sodium borate, and hydrochloric acid were obtained from Panreac (Castelar del Vallés, Barcelona, Spain). Sodium acetate (anhydrous), trimethylamine (TEA), phosphoric acid, ammonium molybdate, and methyl cellulose were purchased from Sigma-Aldrich (Darmstadt, Germany). Standard of amino acids (L-arginine (Arg), L-alanine (Ala), L-asparagine (Asn), L-aspartic acid (Asp), glycine (Gly), L-glutamic acid (Glu), L-glutamine (Gln), L-histidine (His), L-isoLeucine (Ileu), Leucine (Leu), L-Lysine (Lys), L-norvaline (Nor), L-phenylalanine (Phe), L-proline (Pro), L-serine (Ser), L-threonine (Thr), L-tryptophan (Trp), L-tyrosine (Tyr), and L-valine (Val)) were purchased from Sigma-Aldrich (Steinheim, Germany). All the other chemicals and reagents used were of analytical grade.
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6

Biochemical Assays for Antioxidant and Enzymatic Analysis

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Reduced glutathione (GSH), adenosine triphosphate (ATP), acetylthiocholine iodide, 6,7-Dimethyl-5,6,7,8-tetrahydropterine (DMTHP), 5,5- dithiobis-2-nitrobenzoic acid (DTNB), thiobarbituric acid (TBA), xanthine (2,6-Dihydroxypurine), adrenaline, ammonium molybdate, oxidized nicotinamide adenine dinucleotide (NAD), reduced nicotinamide adenine dinucleotide (NADH), tyrosine, tetramethylbenzidine, L-glutamate, sodium azide (NaN3) and amino naphtol sulphonic acid (ANSA) were products of Sigma-Aldrich (St. Louis, MO, USA). Other chemicals and reagents used were of analytical grade.
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7

Drp1 GTPase Actin Interaction Assay

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To remove ATP, actin monomers in G-buffer were incubated with Bio-Rad AG1-X2 100–200 mesh anion exchange resin (Dowex) (Bio-Rad, 1401241) rotating at 4°C for 5 min, followed by low-speed centrifugation to remove resin. Actin filaments (20 μM) were polymerized in 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 10 mM Hepes pH 7.4 for 1 hr at 23°C. Drp1 was diluted in 150 mM KCl, 1 mM MgCl2, 1 mM EGTA, 10 mM Hepes pH 7.4, then centrifuged to remove aggregates as described above.
Drp1 (1.3 μM) was mixed with actin filaments (1 μM), and the final ionic strength was adjusted to the equivalent of 75 mM KCl using 4 M KCl stock. Samples were incubated at 37°C for 5 min. At this point, GTP was added to a final concentration of 250 μM to start reactions at 37°C. Reactions were quenched at various time points by mixing 20 μL of sample with 5 μL of 125 mM EDTA in a clear flat-bottomed 96-well plate (Greiner). Six time points were acquired for each condition. Inorganic phosphate was determined by addition of 150 μl of Malachite green solution (1 mM Malachite green (Sigma Aldrich, 2290105–100 g), 10 mM ammonium molybdate ([Sigma Aldrich, A7302–100 g] in 1N HCl) to 25 μl quenched reactions. Absorbance at 650 nm was measured with a 96-well fluorescence plate reader (TECAN Infinite M1000, Mannedorf, Switzerland). GTP hydrolysis rates were determined by plotting phosphate concentration as a function of time.
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8

Synthesis and Characterization of Tungsten-Molybdenum Oxides

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The LWO material was prepared by a modified Pechini method27 (link). Lanthanum nitrate hexahydrate (Sigma Aldrich), ammonium tungstate (Sigma Aldrich) and ammonium molybdate (Sigma Aldrich) were used as the precursors. The complexation reaction was performed as shown in11 (link). The mixtures were calcined at 900 °C in air to remove the organic constituents and form an oxide. Afterwards, 1 gram of the powder was pressed to pellets with a diameter of 20 mm. The final sintering step was performed at 1500 °C for 12 h with heating rates of 5 K/min to obtain high densification and complete phase formation. XRD measurements were performed with a Bruker D4 X-ray diffractometer. The Mo concentration was varied between 0 and 35%, meaning that up to 35% of the W was substituted by Mo. Higher Mo concentrations appeared to be not stable after storage in air for several days.
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9

Antioxidant and Phytochemical Evaluation

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All reagents and chemicals including gallic acid, rutin, quercetin, aluminum chloride (AlCl3), ferric chloride (FeCl3·7H2O), Folin-Ciocalteu, oxalic acid, trichloroacetic acid (TCA), sulfuric acid (H2SO4), hydrochloric acid (HCl), Na2CO3, ammonium molybdate, potassium ferricyanide (K3Fe(CN)6), catechin, 2,2-diphenyl-1-picrylhydrazyl (DPPH), and 2,2′-azinobis (3-ethylobenzothiazoline-6-sulphonic acid diammonium salt) (ABTS) are products of Sigma-Aldrich, South Africa. Others such as anhydrous sodium carbonate, sodium nitrite (NaNO2), ethanol, methanol, n-butanol, sodium acetate, butylated hydroxyoluene (BHT), diethyl ether, glacial acetic acid, sulfanilic acid, potassium persulfate, and sodium nitroprusside were also purchased from Sigma-Aldrich. All the reagents used were of analytical grade.
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10

Enzymatic and Antioxidant Assays Protocol

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α-Glucosidase and α-amylase enzymes as well as the para-nitrophenyl glucopyranoside (pNPG) substrate for α-glucosidase, 2,2-diphenyl-1-picryl hydrazyl (DPPH), Folin–Ciocalteu (FC) reagent were purchased from Sigma-Aldrich. In our experiments, we also used analytical grade formaldehyde, acetic acid, trichloroacetic acid, H2O2, potassium ferricyanide, NaNO2, AlCl3, Na2CO3, FeCl3, HCl, H2SO4, Na3PO4, ammonium molybdate, NaOH, Na2HPO4.2H2O, K2HPO4.2H2O, NaH2PO4.2H2O, KH2PO4.2H2O, I2, KI, ascorbic acid and several solvents purchased from Sigma-Aldrich and Merck. The standard drugs were collected from retail pharmacies in Bangladesh.
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