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Aprotinin

Manufactured by Thermo Fisher Scientific
Sourced in United States, Canada

Aprotinin is a serine protease inhibitor commonly used in biochemical and biomedical research applications. It functions by inhibiting the activity of various proteolytic enzymes, including trypsin, chymotrypsin, and plasmin. Aprotinin is often utilized in cell culture and protein purification procedures to prevent unwanted proteolytic degradation of target proteins.

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38 protocols using aprotinin

1

Lymphocyte Isolation and Lipid Mediator Analysis

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Lymphocyte separation medium, aprotinin, dimethyl sulfoxide (DMSO) and solvents for HPLC and LC/MS were purchased from Thermo Fisher Scientific (Ottawa, Ontario, Canada). Dextran, adenosine deaminase, leupeptin and potassium phosphate were obtained from Sigma-Aldrich Canada (Oakville, Ontario, Canada). HBSS was purchased from Wisent Bioproducts (St-Bruno, Quebec, Canada). 19-OH-prostaglandin (PG) B2, PGB2, PGB2-D4 and 17-octadecynoic acid (17-ODYA) were purchased from Cayman Chemicals (Ann Arbor, Michigan, USA). PF-4708671 was obtained from Abcam (Cambridge, Massachusetts, USA) and LY2584702 from Selleckchem (Houston, Texas, USA). Thapsigargin was obtained from Tocris Bioscience (Ellisville. Missouri, USA). LTB4 was a generous gift from Dr Louis Flamand (Université Laval, Québec City, Canada). Recombinant CYP4F3A and the NADPH regenerating system were purchased from Corning (Corning, New York, USA). Protease and phosphatase inhibitor cocktail tablets were purchased from Roche (Laval, Quebec, Canada). Primary (anti-phospho-S6 #2211 and anti-S6 #2317) and secondary antibodies were obtained from Cell Signaling (Danvers, Massachusetts, USA). The enhanced chemiluminescent (ECL) substrate was obtained from Millipore Canada Ltd (Toronto, Ontario, Canada).
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2

In vivo Imaging of Platelets and Fibrin

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Platelets were imaged in vivo using anti‐CD42 antibodies conjugated with Dylight 488 (Emfret Analytics, Eibelstad, Germany). Fibrin was detected in vivo using a mouse anti‐human fibrin monoclonal antibody (clone 59D8), labelled with Alexa 647, that cross‐reacts with mouse fibrin but not fibrinogen 17. Full‐length tPA was from Boehringer Ingelheim, Ingelheimam Rhein, Germany. Antithrombin‐III, α‐thrombin, human α2‐antiplasmin and human plasmin were from Haematologic Technologies, Essex Junction, USA. PN‐1 was a gift from Denis Monard, Friedrich Mischer Institute, Basel, Switzerland. Aprotinin was purchased from Fischer Scientific, Pittsburgh, USA. The chromogenic substrate H‐d‐pyroglutamyl‐Gly‐l‐Arg‐p‐nitroanilide (S‐2444) and Gly‐Arg‐p‐nitroanilide were from Chromogenix Instrumentation Laboratories, Milan, Italy and Sigma‐Aldrich, St. Louis, USA respectively. Human blood was collected in citrated tubes from healthy donors who were informed about the objectives of the study. Platelet‐rich plasma was prepared by centrifugation at 100 × g for 10 min at room temperature. Aliquots of platelet‐rich plasma were centrifuged at 1500 × g for 10 min to obtain platelet‐poor plasma and the supernatant plasma was centrifuged at 11,000 × g for 5 min to obtain platelet‐free plasma.
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3

Apoptosis Mechanisms in Cancer Cells

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In order to investigate the mechanisms of interaction with the apoptotic pathway in cancer cells, the cells were plated in six-well plates at a density of 1×106 cells/wells and then incubated for 48 h. The cells were treated with various concentrations of 7-MH at 30 min, and cell death was induced with H2O2 at 15 min for SH-SY5Y cells. In HepG2, HT29, 4T1, and LNCaP cells, the cells were treated with various concentrations of 7-MH at the indicated time. Whole-cell lysates were prepared with lysis buffer [25 mM HEPES, pH 7.7, 0.3 mM MgCl2, 0.2 mM EDTA, 10% Triton X-100, 20 mM β-glycerophosphate, 1 mM sodium orthovanadate, 1 mM phenylmethylsulfonyl fluoride (PMSF), 1 mM dithiothreitol (DTT), 10 µg/ml aprotinin, and 10 µg/ml leupeptin] (Gibco; Thermo Fisher Scientific, Inc.). The cell lysates were collected from the supernatant after centrifugation at 2,500 × g for 10 min 4°C.
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4

Protease Activity Detection Assay

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We used either commercially available protease inhibitor peptides or growth of bacterial strains on the protease detection plates. Protease inhibitors were α-2-macroglobulin (7.8 mg/ml in sterile water; Thermo Fisher), aprotinin (0.3 mM in sterile dH20; Thermo Fisher), leupeptin (10 mM in sterile dH20; Thermo Fisher), and bestatin (1 mM in methanol; Thermo Fisher) that were pipeted as 2.0 μl drops onto the surface of the protein containing plates and allowed to be absorbed into the plate and diffuse for 1 hour. The bacterial strains Photorabdus (Xenorhabdus) luminescens strain Hm primary and secondary forms, Escherichia coli B, Citrobacter freundii, Staphylococcus aureus, S. epidermidis and Enterococcus faecalis were allowed to grow two days at 30°C. Following incubation, the bacterial strains were washed off the plate using a gentle stream of water in order to remove the colonies and eliminate their potential for surface inhibition effects on diffusion of the protease and/or dyes.
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5

Alginate Fiber Seeding and Culture

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Fibers fabricated with 15% alginate were utilized for all experiments. In preparation for cell seeding, fibers were incubated in high-glucose DMEM for 20 min at 37°C. The fibers were then transferred to cell culture plates coated with 2% agarose type VII (Sigma-Aldrich) to minimize cell adhesion to the plate surface and increase seeding efficiency onto the fibers. For the seeding density study a seeding volume of 15 μl at either 10,000, 20,000, or 40,000 cells/μl was pipetted onto the fiber surface. All subsequent in vitro and in vivo studies used 15 μl at 40,000 cell/μl (for a total seeding density of 600,000 cells/fiber bundle). Fibers with cells were incubated for 1 hour at 37°C with hydration levels maintained by addition of 15 μl of Growth Medium halfway through. After the 1-hour incubation, Control Medium (high-glucose DMEM, 10% FBS, 1% P/S, 30 μg/ml aprotinin (ThermoFisher Scientific), and 1 ng/mL FGF-2) was added to fully submerge the fibers. Media was changed 24 hours post-seeding and then every other day until harvest.
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6

Determination of HATL5 and Matriptase Inhibition

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The assays were performed in 96-well plates in a total reaction volume of 100 µL using 50 mM Tris-HCl pH 8.0, 150 mM NaCl, 0.01% Tween-20, 0.01% BSA for dilution of all samples. 5 nM purified active recombinant HATL5 or matriptase serine protease domain was incubated at 37°C for 60 min with 100 µm of the synthetic peptide L-1720 Suc-Ala-Ala-Pro-Arg-pNA (Bachem, Bubendorf, Switzerland) in the absence or presence (inhibitor and substrate added concomitantly) of HAI-1 (60 nM) (R&D, Minneapolis, MN), HAI-2 (40 nM) (R&D, Minneapolis, MN), aprotinin (2 µm), leupeptin (20 µm), benzamidine (2 mM), or serpinA1 (60 nM) (all from Thermo Scientific, Waltham, MA). Changes in absorbance at 405 nm were monitored using a Magellan NanoQuant Infinite M200 Pro plate reader (Tecan US, Inc., Morrisville, NC).
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7

Two-Dimensional Gel Electrophoresis Workflow

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Where applicable, consumables were of electrophoresis grade or higher. Vacutainer® SST (serum-separator tubes) and 21G butterfly needles were from BD (Franklin Lakes, NJ, United States). ReadyStripTM immobilized pH gradient (IPG) strips (17 cm, pH 3–10 non-linear), Bio-Lyte carrier ampholytes (pH 3-10, pH 4-6), and 2-D SDS-PAGE Standards were from Bio-Rad Laboratories (Hercules, CA, United States). AEBSF, agarose I, bovine serum albumin (BSA), CHAPS, dithiothreitol (DTT), leupeptin, mineral oil, and TG-SDS buffer concentrate were from Amresco (Solon, OH, United States). Acetic acid was from Anachemia (Montreal, Quebec); sodium dodecyl sulfate (SDS) was from J. T. Baker Chemical Co. (Phillipsburg, NJ, United States); mass spectrometry-grade trypsin was from G-Biosciences (St. Louis, MO, United States); Coomassie Brilliant Blue G-250 (CBB) was from Genlantis (San Diego, CA, United States); and Broad-range (200–10 kDa) Unstained Protein Standard was from New England Biolabs (Ipswich, MA, United States). Ammonium persulfate and aprotinin were from Thermo Fisher Scientific (Waltham, MA, United States). Acetonitrile, formic acid, and methanol were from EMD Millipore (Burlington, MA, United States). Acrylamide/bis-acrylamide (37.5:1) solution and all other chemicals utilized were from Alfa Aesar (Haverhill, MA, United States). Double glass-distilled water (ddH2O) was used throughout.
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8

Cell Protein Extraction and Western Blot

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Attached and ECM-detached cells were washed once with ice-cold PBS and lysed in RIPA buffer (50 mM Tris (pH 8.0), 150 mM NaCl, 1% Nonidet P-40, 0.5% Sodium deoxycholate, 0.1% SDS) supplemented with 1 mg mL−1 aprotinin, 5 mg mL−1 leupeptin, 20 mg mL−1 phenylmethylsulfonyl fluoride (PMSF) and HALT phosphatase inhibitor mixture (Thermo Fisher Scientific). Lysates were collected after centrifugation for 15 min at 4°C at 14,000 r.p.m. and normalized by BCA assay (Pierce Biotechnology). Normalized lysates underwent SDS-PAGE and transfer/blotting were carried out as described previously.63 (link) The following primary antibodies were used for western blotting: β-actin (Sigma-Aldrich; A1978) (1:10000), Vinculin (Proteintech; 66305-1-Ig) (1:3000), mouse Irg1/Acod1 (Cell Signaling Technology (CST); 17805) (1:1000), human IRG1/ACOD1 (CST; 77510) (1:1000), Tim23 (BD Biosciences; 611222 (1:2000), Tom20 (CST; 42406) (1:1000), Sdhb (Proteintech; 10620-1-AP) (1:10000). Secondary antibodies used were Alexa Fluor Plus 680 and 800 (Thermo Fisher Scientific; A32788, A32808) (1:10000) against mouse and rabbit, respectively, and bands were visualized with the LiCor Odyssey CLx (Licor).
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9

Western Blot Analysis of Sperm Proteins

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Percoll‐washed sperm cells were sonicated and sperm heads and tails were isolated as described previously.
23 (link) Whole sperm cells, sperm heads and tails were lysed in radio immune preciptation assay buffer (Thermo Scientific) with freshly added protease inhibitors: aprotinin, leupeptin, pepstatin, and PMSF (Thermo Scientific) on ice for 30 min followed by a 15 min spin at 14,000 x g, 4°C. Sperm lysates or CRISP2 precipitates were denatured in 4x sodium dodecyl sulfate (SDS) sample buffer (200 mM Tris‐HCl, pH 6.8, 10% β‐mercapto‐ethanol, 8% SDS, 0.08% bromophenol blue, 40% glycerol) and boiled for 10 min. Samples were loaded onto SDS‐PAGE gels (5% stacking gel, 12% resolving gel) and were blotted onto 0.2 µm nitrocellulose membranes (GE Healthcare) at 100 V for 1 h. After blocking for 3 h at RT in 5% (w/v) BSA in PBS with 0.05% (v/v) Tween‐20 (PBST), membranes were incubated with primary antibodies (Supplementary Table S1) overnight at 4°C. After three washes in PBST for 15 min, membranes were incubated with horse radish peroxidase conjugated secondary antibodies (Table S1) for 1 h at RT. After rinsing four times in PBST for 20 min, membranes were developed using chemiluminescence (enzyme chemilumenescence [ECL]‐detection kit; Supersignal West Pico, Pierce). Migration levels of proteins were visualized using a pre‐stained protein ladder, 10 to 250 kDa (Thermo Scientific).
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10

Mycelia Protein Extraction Protocol

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Mycelia from GMM agar plates were collected and stored at −80°C prior to protein extraction. For protein extraction, the lysis buffer consisted of 100 mM triethylammonium bicarbonate (TEAB) with 1× Halt protease inhibitor cocktail (100×), with the final concentration of each component being 1 mM AEBSF [4-(2-aminoethyl)benzenesulfonyl fluoride hydrochloride], 800 nM aprotinin, 50 μM bestatin, 15 μM E64, 20 μM leupeptin, and 10 μM pepstatin A (Thermo Scientific, Rockford, IL) and 200 µg/ml phenylmethylsulfonyl fluoride (Sigma-Aldrich, St. Louis, MO). Mycelia were homogenized directly using Precellys 24 homogenizer (Bertin, Rockville, MD) in which each sample was processed inside a 2-ml cryotube with 0.5-mm glass beads three times (at 4°C and 6,500 rpm for 1 min., repeated 3 times with 15-s pauses in between). The lysed fungi were centrifuged at 17,000 × g for 15 min. Protein concentrations in the supernatants were measured by the Bradford assay with albumin for the standard curve (Bio-Rad Laboratories, Inc., Hercules, CA).
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