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40 protocols using vicell analyzer

1

Cell Viability and Cell Cycle Analysis

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The number of living cells was measured by trypan blue exclusion using Vi-Cell analyzer (Beckman Coulter). Cell-cycle distributions were performed on ethanol-fixed cells, stained with propidium iodide and analysed by flow cytometry. Flow cytometry data were acquired using CellQuest Pro (Becton Dickinson) software on the FACS LSRII machine (Becton Dickinson) and were analysed using ModfitLT (Verity) software.
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2

MC3T3-E1 Cell Culture Protocol

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The MC3T3-E1 cell line was maintained in alpha minimal essential medium supplemented with 10% fetal bovine serum (Hyclone, Logan, UT, USA) at 37°C. The cell count and cell viability were determined using a Beckman Coulter automatic cell counter (VI-cell analyzer; Beckman Coulter, Inc., Brea, CA, USA). All disks were steam-sterilized and placed in 24-well tissue culture plates under aseptic conditions. Complete medium was added to the 24-well plates. Then, the cells were seeded at a density of 2×104 cells cm−2 and were incubated in 1 mL of soaking suspension at 37°C in a humidified atmosphere (5% CO2, 95% air) with media replacement every 3 days.
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3

Trypan Blue Cell Viability Assay

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Quantitative analysis of viable cells was investigated using the Trypan blue exclusion method, which is based on the principle that the suspension of hCMEC/D3 cells is simply mixed with Trypan blue, then automatically visualized and counted by the Vi-Cell Analyzer using the Vi-Cell XR software (Beckman Coulter, Brea, CA, USA). In that protocol, only nonviable cells take up the dye. Before harvesting cells, the confluency level was visualized with an Olympus (Tokyo, Japan) 1X71 inverted phase-contrast microscope.
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4

Cell Counting and Proliferation Analysis

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We count a total cell count in each passage using a Z2-Counter (Beckman Coulter, Miami, FL, USA). For each measurement, we analyzed 100 µL/1 mL cell suspension (approximately 1.5 × 106 cells/1 mL). Proliferation capacity was evaluated as population doublings (PDs) and population doubling time in hours (Equation (1)). Proliferation activity was compared from the 1st passage when hNDP-SCs were seeded into two different growth media.

Equation (1). Nx is the total passage cell count calculated using the Z2-Counter (Beckman Coulter), and N1 is the initial cell count seeded into the culture dish (5000 cells/cm2).
To determine the number of viable hNDP-SCs cells from each sample in the 3rd and 11th passage, we used the trypan dye exclusion method by Vi-Cell analyzer (Beckman Coulter). This method is based on the principle that viable cells do not take up the trypan blue dye, whereas non-viable cells do due to disturbed cell membrane. For each analysis, we utilized 250 µL of cell suspension (approximately 1.5 × 106 cells/1 mL) and 250 µL PBS.
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5

Cellular Isolation from Murine Tissues

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Terminal bleeds were collected in serum separator tubes (Fisher Scientific) at r.t. and centrifuged at 6000 g for 1.5 min. Cell-free sera were collected and stored at −80 °C. Spleens and popliteal lymph nodes were dissociated using the GentleMACS Dissociator (Miltenyi). Cell suspensions were subsequently washed with HBSS (Gibco) + 5% fetal bovine serum (FBS) (Gibco), lysed to remove red blood cells with ACK Lysing Buffer (Thermo-Fisher), and filtered through 70 μm strainers (BD Biosciences). Cells were counted with the Vi-Cell analyzer (Beckman Coulter) and resuspended in RPMI-1640 (Thermo-Fisher) + 10% FBS.
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6

Cell Labeling with [18F]FPenM-C2Am

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Vehicle- and MEDI3039-treated (10 pM, 24 h) cells (n = 3) were harvested, counted and viability assessed using a Vi-CELL analyzer (Beckman). The cells were then resuspended in HBS buffer and incubated with [18F]FPenM-C2Am (1–10 μM, 7–11 MBq, Am = ~ 10.5 GBq/µmol at the start of labeling) at 37 °C for 20 min. Cell pellets (5 million cells, centrifuged at 700g for 5 min at 4 °C) were washed three times with HBS buffer (1 mL) and radioactivity counted for 1 min using a gamma counter (AMG Hidex) set to monitor the fluorine-18 gamma emission (511 keV).
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7

Apoptosis Quantification by Flow Cytometry

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Viability was quantified by trypan blue exclusion using a Vi-cell analyzer (Beckman Coulter, Brea, CA). For analysis of percent of cells with subdiploid amounts of DNA, indicative of apoptotic DNA fragmentation, cells were harvested and then stained with propidium iodide (PI) solution (50 µ/ml PI, 0.1% Triton X and 0.1% of sodium citrate) for a minimum of 4 hours. Samples were read on the FL-3 channel of a flow cytometry (FACSCalibur, Becton Dickinson, Franklin Lakes, NJ). Subdiploid population was quantified using CellQuest software (BD Bioscience, Franklin Lakes, NJ).
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8

Isolation and Characterization of Immune Cells

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Lymphoid and non-lymphoid organ DCs were harvested and prepared as described previously30 (link). Briefly, spleens and inguinal skin-draining LNs were minced and digested in 5 ml of IMDM +10% FCS (cIMDM) with 250 μg/ml of collagenase B (Roche) and 30 U/ml of DNaseI (Sigma-Aldrich) for 45 min at 37 °C with stirring. Lungs were minced and digested in 5 ml of cIMDM with 4 mg/ml of collagenase D (Roche) and 30 U/ml of DNaseI (Sigma-Aldrich) for 1.5 h at 37 °C with stirring. Tumours were minced and digested in serum-free IMDM with 125 μg/ml Liberase (Roche) and 30 U/mL of DNaseI (Sigma-Aldrich) for 45 minutes at 37 °C with stirring. After digestion was complete, single-cell suspensions from all organs were passed through 70-μm strainers and red blood cells were lysed with ammonium chloride–potassium bicarbonate (ACK) lysis buffer. Cells were subsequently counted with a Vi-CELL analyzer (Beckman Coulter) and 3–5×106 cells were used per antibody staining reaction.
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9

Isolation of Primary Human Umbilical Vein Endothelial Cells

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Primary Human Umbilical Vein Endothelial Cells (HUVEC) were isolated from umbilical cords of healthy neonates directly after cesarean delivery at the Department of Gynecology and Obstetrics, University Hospital, LMU Munich, Germany. Written informed consent from the mother was obtained before donating umbilical cords in accordance with the Declaration of Helsinki. After collagenase A (Roche) treatment, HUVEC were detached from umbilical vein vascular wall and cultured in Endothelial Cell Basal Medium (ECGM; PromoCell) with Supplement Mix (PromoCell), supplemented with 10% FCS (Biochrom AG) and 1% Penicillin/Streptomycin (Pen/Strep, Gibco). A ViCell analyzer (Beckman Coulter, Fullerton, CA, United States) was used to evaluate the cell count and viability. For each of the independent experiments, we used non-pooled cells obtained from different donors at passage 2–4.
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10

Murine Bone Marrow Isolation and Culture

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Bone marrow (BM) was harvested from the femur, tibia, and pelvis of mice. Bones were collected and fragmented by mortar and pestle in MACS buffer, and debris was removed by passing cells through a 70-µm strainer. Red blood cells were lysed with ACK lysis buffer and cells were subsequently counted on a Vi-CELL analyzer (Beckman Coulter). 3-5×106 were used per antibody staining reaction. For BM culture experiments, bulk BM cells were cultured at 37⁰C in 4 mL total volume of cIMDM supplemented with 100 ng/mL Flt3L (Peprotech) for nine days before further analysis.
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