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6 protocols using anti p smad3

1

Western Blotting of EMT Markers

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Western blotting was carried out as previously described [27 (link)]. The primary antibodies used were anti-N-Cadherin (BD Biosciences, Breda, Netherlands #610920), anti-α-Smooth Muscle Actin (Sigma, Zwijndrecht, Netherlands #A2547), anti-Snail (Cell Signaling, Leiden, Netherlands #3879), anti-Smad2 (BD Biosciences, Breda, Netherlands #610842), anti-p-Smad2 (Cell Signaling, Leiden, Netherlands #3108), anti-Smad4 (Santa Cruz #sc7966), anti-TGFβRI (Santa Cruz, Heidelberg, Germany #sc 398), anti-TGFβRII (Santa Cruz, Heidelberg, Germany #sc-400), anti-Smad3 (Epitomics, Duiven, Netherlands #1735–1), anti-p-Smad3 (a kind gift from Dr Edward B Leof, Mayo Clinic, Rochester, Minnesota) and anti-β-actin (Sigma, Zwijndrecht, Netherlands #A5441). All the secondary antibodies were from Sigma, Zwijndrecht, Netherlands. Western quantification was performed using image J software.
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2

Signaling Pathway Modulation in Lens Epithelial Cells

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5 × 105 lens epithelial cells were grown in a 6-well plate in the presence of serum-containing media, followed by serum starvation for 6–8 h. Post starvation, cells were treated with inhibitors for p38 and ERK pathways (10 μM) or with scFv antibodies and TGF-β2 (2 ng/ml) was added 1 h after the addition of the reagents, and was further incubated for 2 h. At the end of the incubation, cells were washed twice with PBS, harvested and lysed in 100 μl of ice cold RIPA buffer (25 mM Tris-HCl [pH 7.6], 1 mM Na3VO4, 1% sodium deoxycholate, 150 mM NaCl, 0.1% SDS, 1% NP-40) with a cocktail of protease inhibitors. Cell lysate was separated on 10% SDS-PAGE, transferred on the nitrocellulose membrane, blocked with 2% BSA for 1 h and probed with primary anti-pFAK (Y397, 1:500; Sigma Chemicals), anti-pSMAD3 (Y208; Sigma Chemicals), anti-pERK (Th202/Tyr204; Cell Signaling), or pp38 (Th180/Tyr182; Cell Signaling) antibodies, followed by anti-rabbit-HRP conjugate antibody (1:10,000). The membrane was developed using ECL reagent (Bio-Rad) and acquired on FluorChem E Imaging System. For evaluation of the corresponding total protein levels of each molecule, stripping and re-probing of the membrane was carried out with anti-FAK, Anti-SMAD3, anti-ERK and anti-p38 antibodies. Equal loading was ensured by probing with anti-β-actin antibody.
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3

Western Blot Analysis of Cell Signaling Proteins

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RIPA buffer (MilliporeSigma; Merck KGaA) was used to extract total proteins from cultured 22Rv1 or PC-3 cells. Proteins were quantified with a BCA method and separated by 12% SDS-PAGE, and transferred onto PVDF membranes (GEHealthcare). The membranes were blocked in 5% non-fat dry milk diluted with TBST (Tris–HCl 20 mmol/L, NaCl 150 mmol/L, pH 7.5, 0.1% Tween 20) at room temperature for 1 h and washed with TBST for three times. Subsequently, specific primary antibodies (anti-Vimentin, anti-N-cadherin, anti-a-SMA, anti-E-cadherin, anti-Claudin 1, anti-GAPDH, anti-p-Akt, anti-Akt, anti-p-mTOR, anti-mTOR, anti-PTEN, anti-p-Smad2, anti-Smad2, anti-p-Smad3, anti-Smad3, anti-p-Smad2/3, anti-Smad2/3, and anti-laminB, Sigma, USA) were incubated with the membranes at 4 °C overnight. Next, the membranes were washed with TBST for three times and incubated with the secondary antibodies at room temperature for 2 h. Proteins were visualized using chemiluminescence using ECL luminescence reagent (Absin Bioscience Inc., Shanghai, China). The band intensities were quantified using Image-Pro Plus 6.0 (Media Cybernetics, Inc.). GAPDH was used as a loading control for normalization. The primary antibodies and secondary antibodies used in western blotting are included in Table 1.
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4

Protein Expression Analysis in 2D and 3D Cultures

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Total cell lysate from 2D monolayer culture was prepared by extracting cells with modified RIPA buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholate, 0.1% SDS, 2 mM EDTA) supplemented with 50 mM NaF, 1 mM sodium pervanadate, and protease inhibitors. Total cell lysate from 3D culture was prepared by incubating cells at 4 °C in the modified RIPA buffer supplemented with 0.5% SDS and protease/phosphatase inhibitor cocktail (Pierce). The extracts were clarified by centrifugation at 13,000 rpm for 30 min and the supernatant was used for immunoblotting. Sources of different antibodies were: anti-Pfn1 (Abcam), anti-phospho-FAK (Y397) (Invitrogen), anti-Smad3 (Biorad), anti-ERK1/2, anti-phospho-ERK1/2 and anti-phospho-Smad3 (S423/S425) (Cell Signalling), anti-Pfn2 and anti-FAK (Santa Cruz), and anti-GAPDH and anti-tubulin (Sigma-Aldrich) Immunoblotting concentrations for different antibodies were: 1:3000 for anti-Pfn1, anti-GAPDH and anti-tubulin; 1:500 for anti-Pfn2, anti-ERK1/2, anti-pERK1/2 and anti-FAK; and 1:1000 for anti-Smad3, anti-pSmad3 and anti-pFAK.
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5

Cellular Fractionation and Western Blot Analysis

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Antibodies used for flow cytometry are described in S2 Table. Cells were analyzed on a FACSCanto II flow cytometer using FlowJo software (Tree Star Inc.). Protein from whole cell lysate (total protein), nuclear fraction and cytoplasmic fraction was purified using NE-PER nuclear and cytoplasmic extraction reagents (Thermo Fisher). Antibodies for Western blotting included: anti-GAPDH-HRP (Abcam), anti-β actin-HRP (Sigma), anti-fibrillarin (Abcam), anti-SMAD4 (Abcam), anti-SMAD2, 3 (Cell Signaling Tech), anti-JNK (Santa Cruz Biotechonolgy), anti p-JNK (Cell Signaling Tech), anti-p-SMAD2 (Cell Signaling Tech), anti-p-SMAD3 (Millipore), anti-p-SMAD5 (Abcam), anti-USP9x (Abcam), and anti-TIF1γ (TRIM33) (Abcam).
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6

Quantitative Protein Analysis in Cardiac Tissue

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Anti-pSMAD2 (3108), anti-pSMAD3 (9520), anti-totSMAD (43B4), and anti-GAPDH (2118) are from Cell Signaling; anti-GDF11/8 (ab124721) and anticardiac troponin T antibody (ab8295) are from Abcam; anti-pSMAD3 from Millipore (07–1389) was used for immunostaining. Secondary antibodies: goat anti-rabbit IgG (H+L)-HRP conjugate, BIO-RAD 172 to 1019; goat antimouse IgG (H+L) secondary antibody, Alexa Fluor 594 conjugate (A-11032); goat anti-rabbit IgG (H+L) secondary antibody, Alexa Fluor 488 conjugate (A-11008); and wheat germ agglutinin, Alexa Fluor 647 conjugate (W-32466) antibodies are from LifeTechnologies.
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