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7 protocols using odyssey western blotting kit

1

Protein Extraction and Western Blotting

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Protein was extracted from SH-SY5Y cells using RIPA Lysis buffer (Life Technologies, Carlsbad, California, USA). Antibodies against GRIA2, GABRA1 and GAPDH were purchased from Abcam (Cambridge, Massachusetts, USA). Western blotting was performed according to the instructions of the Odyssey Western Blotting Kit (LI-COR Biosciences, Lincoln, Nebraska, USA) (see Supplementary Material for more details).
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2

Quantitative Western Blot Analysis of CYP2E1

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RIPA Lysis buffer (Life Technologies) was used to extract protein from HepG2, HepG2CYP2E1, and HepaRG cells. The expression of CYP2E1 and GAPDH were tested by western blotting assays using the Odyssey Western Blotting Kit (LI-COR Biosciences) with antibodies specific for CYP2E1 (rabbit anti-human) or GAPDH (mouse anti-human) that were obtained from Abcam (Cambridge, MA). Specific protein band intensities were measured with an Odyssey CLx Infrared Imaging System for quantitative analyses.
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3

Quantitative CYP2C9 Protein Analysis

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Proteins were isolated from HepaRG cells that were harvested after transfection or chemical treatment. Quantitative Western blotting was performed following the Odyssey™ Western Blotting Kit (LI-COR Biosciences) protocol. Antibodies against CYP2C9 or GAPDH (Abcam, Cambridge, MA) were used to detect CYP2C9 or GAPDH protein levels and an Odyssey CLx Infrared Imaging System was used to perform quantitative analyses, with infrared labeled secondary antibodies.
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4

Western Blotting of Apoptotic Markers

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Western blotting was performed by loading 30 μg protein on 10% (w/v) tris-glycine denaturing gels and separating the proteins by electrophoresis, then transferring them to a PVDF membrane. After blocking, the membrane was incubated with primary antibodies, anti-PARP rabbit monoclonal antibody (1:1000, Cell Signaling Technology, Invitrogen Fisher Scientific, Illkirch, France), anti-caspase-3 rabbit monoclonal antibody (1:1000, Cell Signaling Technology), anti-Bax rabbit monoclonal antibody (1:1000, Cell Signaling Technology), anti-Bcl-2 rabbit monoclonal antibody (1:1000, Cell Signaling Technology) at +4 °C overnight. Following incubation, the membrane was incubated with anti-β-actin mouse monoclonal antibody (1:1000, Cell Signaling Technology) at room temperature for 1 h. After washing, the membrane was incubated with infrared labeled secondary antibodies (Odyssey Western Blotting kit, LI-COR Biosciences, Lincoln, NE, USA) at room temperature for 1h. Proteins were visualized, and quantified by scanning the membrane on an Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE, USA) with both 700- and 800-nm channels.
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5

Quantitative CYP2D6 Protein Analysis

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Protein extracts from HepaRG, HepG2, HepG2CYP2D6, and Huh7 cells were prepared using RIPA Lysis buffer with protease inhibitors (Life Technologies) and quantified using Pierce BCA Protein assay kit (Thermo Scientific). Equal amounts of the total proteins from different experimental groups were separated on a 10% polyacrylamide gel and then transferred to a 0.45-μm polyvinylidene difluoride membrane (Millipore, Bedford, MA). Western blot was performed following the instructions from the Odyssey Western Blotting Kit (LI-COR Biosciences). The rabbit-anti-human CYP2D6 polyclonal primary antibody and the mouse GAPDH monoclonal primary antibody were purchased from GeneTex (Irvine, CA) and Abcam (Cambridge, MA), respectively. The protein bands were visualized after the scanning of fluorescence signal and the image analyses were performed with the Odyssey CLx Infrared Imaging System.
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6

Protein Extraction and Western Blotting

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The ganglia were mechanically dissociated using Precellys 24 Bertin technologies into a RIPA lysis buffer (Thermofisher, Rockford, IL, USA). After tissue lysis, homogenates were centrifuged (4 °C, 10,000 rpm) for 10 min. Pellets were resuspended in a Laemmli buffer (Bio-Rad). After protein quantification, 50 µg of protein was used to perform electrophoresis (Tris-HCl PAGE-Gel (Bio-Rad laboratories Inc., Hercules, CA, USA). The transfer of proteins was performed using an activated-methanol membrane (0.35 A) (Merck Millipore, Tullagreen, Carrigtwohill, Co, Cork, Ireland, Immobilon FL Transfer Membrane) at 4 °C for 90 min. Blocking and antibody incubation were performed using the IBindTM Flex Western System SLF2000 (Invitrogen). The intensity of each band was determined by pixel density integration using LI-COR® Odyssey Western Blotting Kits. Antibodies used are presented in Table 1.
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7

Western Blot Analysis of Protein Samples

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At 24hpi, culture medium was removed and cells were resuspended into RIPA lysis buffer (Thermofisher, Rockford, IL, USA). After cell lysis, homogenates were centrifuged at 10,000 rpm for 10 min at 4 °C. Cell lysates were resuspended into Laemmli buffer (Bio-Rad Laboratories Inc, Hercules, CA, USA). After protein quantification, 50 µg of protein was used to perform electrophoresis (Tris-HCl PAGE-Gel, Bio-Rad laboratories Inc, Hercules, CA, USA). Transfer of proteins was performed using activated-methanol membrane (Immobilon FL Transfer Membrane, Merck Millipore, Tullagreen, Carrigtwohill, County Cork, Ireland) at 4 °C during 1h30 with 0.35A. Blocking and antibody incubation (shown in Table 2) were performed using the IBindTM Flex Western System SFL2000 (Thermofisher, Invitrogen, Carlsbad, CA, USA). The intensity of each band was determined by pixel density integration using LI-COR® Odyssey Western Blotting Kits.
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