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Acetonitrile

Manufactured by Agilent Technologies
Sourced in United States, China

Acetonitrile is a versatile organic solvent commonly used in analytical chemistry and life science research. It is a colorless, volatile liquid with a characteristic mild odor. Acetonitrile is widely used as a mobile phase component in high-performance liquid chromatography (HPLC) and as a solvent in various extraction and sample preparation techniques.

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12 protocols using acetonitrile

1

Extraction and Cleanup of Analytes

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An analytical portion of 5 g of animals or honey was shaken with 5 mL of distilled water and 10 mL of acetonitrile (Chempur, Poland). Then, a mixture of salts containing 4 g of anhydrous magnesium sulphate (VI) (Chempur, Poland), 1 g of sodium chloride (Chempur, Poland), 1 g of trisodium citrate (Chempur, Poland), and 0.5 g of sesquihydrate disodium hydrogen citrate (Chempur, Poland) was added. The contents were shaken for 2 min and centrifuged for 5 min at 4500 rpm at 21 °C. Six millilitres of the acetonitrile phase of the obtained extract was transferred to a polypropylene test tube containing 150 mg of PSA (primary secondary amine) (Agilent, USA) and 900 mg of anhydrous sodium sulphate (VI) (Chempur, Poland). The extract was vigorously shaken for 2 min and centrifuged for 5 min under conditions as above. Four millilitres of the extract was collected and transferred to a glass tube, evaporated to dryness on a rotary evaporator Heidolph Laborota 4000 Efficient (Heidolph, Germany), and dissolved in 4 mL of petroleum ether (Chempur, Poland).
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2

Peptide Fractionation and Desalting

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Labelled peptides were desalted on a Strata-X 33 μM polymeric reversed phase column (Phenomenex, Torrance, CA, USA) by firstly rinsing the column with 100% methanol (Thermo Fisher Scientific, San Jose, CA, USA), 100% acetonitrile (Fisher Scientific, Australia), 100% milliQ H2O followed by loading of the labelled peptides, washing with milliQ H2O and elution with 80% acetonitrile plus 0.1% formic acid. The dried sample was dissolved in 100 μL of 10 mM KH2PO4, 10% acetonitrile, pH 3.0 and separated by strong cation exchange liquid chromatography (SCX) on an Agilent 1100 HPLC system (Agilent Technologies) using a PolySulfoethyl column (4.6 × 100 mm, 5 μm, 300 Å, Nest Group, Southborough, MA, USA). Peptides were eluted with a linear gradient of 0–400 mM KCl in 10 mM KH2PO4, 10% acetonitrile, pH 3.0 at a flow rate of 0.5 mL/min. A total of 40 × 1 min fractions were combined into 8 fractions based on an even amount of peptide absorbance at 280 nm for each. The 8 fractions were desalted on a Strata-X 33 μM polymeric reversed phase column as detailed previously. The 8 fractions were then dried under vacuum.
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3

Metabolomic Analysis of Plant Hormones

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High-performance liquid chromatography (HPLC)-grade acetonitrile, methanol, and water were procured from Burdick & Jackson (Morristown, NJ). Mass spectrometry-grade formic acid was purchased from Sigma-Aldrich (St Louis, MO). Calibration solution containing multiple calibrants in a solution of acetonitrile, trifluroacetic acid, and water was purchased from Agilent Technologies (Santa Clara, CA). Metabolites and internal standards, including N-acetyl Aspartic acid-2H3, Tryptophan-15N2, Sarcosine-2H3, Glutamic acid-2H5, Thymine-2H4, Gibberellic acid, Trans-Zeatine, Jasmonic acid, Anthranilic acid 15N, and Testosterone-2H3, were purchased from Sigma-Aldrich (St. Louis, MO).
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4

Lyophilization and Extraction of Bee Samples

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The samples of the worker bees and the brood were lyophilized using a Labconco Freezone 2.5 freeze dryer (Labconco, USA) (pressure: 0.024 mbar; temperature: 50 °C, time: 168 h).
Analytical portions of 5 g of the lyophilized animals or honey were shaken with 10 mL of acetonitrile (Chempur, Poland). Then, a mixture of salts containing 4 g of anhydrous magnesium sulfate (VI) (Chempur, Poland), 1 g of sodium chloride (Chempur, Poland), 1 g of trisodium citrate (Chempur, Poland), and 0.5 g of sesquihydrate disodium hydrogen citrate (Chempur, Poland) was added. The contents were shaken for 2 min and centrifuged for 5 min at 4500 rpm at 21 °C. Six millilitres of the acetonitrile phase was transferred to a polypropylene test tube that contained 150 mg of PSA (primary secondary amine) (Agilent, USA) and 900 mg of anhydrous sodium sulfate(VI) (Chempur, Poland). The extract was vigorously shaken for 2 min and centrifuged for 5 min as described above. Four millilitres of the obtained extract was taken and transferred to a glass tube, evaporated to dryness on a Heidolph Efficient Labware 4000 rotary evaporator (Heidolph, Germany), and then dissolved in 4 mL of petroleum ether (Chempur, Poland).
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5

HPLC Analysis of Salvianolic Acids and Tanshinones

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The sample preparation followed the previously described method [45 (link)]. The contents of the salvianolic acid and tanshinones were determined using a HPLC (high-performance liquid chromatography) system (Agilent Zorbax, Agilent, Santa Clara, CA, USA). The chromatographic separation was performed using a C18 column (Agilent Eclipse XDB-C18-USP L1, 4.6 mm × 250 mm, 5 μm particle size) at 30 °C and a sample injection volume of 20 μL. The detection at 280 nm, using a flow rate of 1.0 mL/min over a gradient of methanol containing 0.4% acetic acid (buffer A), triple distilled water containing 0.4% acetic acid (buffer B), and acetonitrile (Fisher Scientific) containing 0.4% acetic acid (buffer C). The gradient conditions are shown in Supplementary Material Table S3. The standards of rosmarinic acid (RA), salvianolic acid B (SAB), cryptotanshinone (CT), and tanshinone II A (T-II A) were purchased from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China).
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6

HPLC Analysis of Compounds

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The Dionex HPLC system (UltiMate 3000, GER) consisted of quaternary gradient pump, an ASI-100 auto sampler, a TCC-100 thermostat column oven, and an ultraviolet detector (DAD). Chromatographic data was acquired using Chromeleon software version 6.80. A Zorbax Hypersil ODS Column (150×4.6 mm, 5.0 μm) (Agilent Technologies, China) was used as a stationary phase. The mobile phase consisted of acetonitrile (Agilent Technologies, Shanghai Branch, China) – 0.05 mol/L KH2PO4 (Wuhan Analytical reagent company, Wuhan, China) adjusted to pH 4.5 with triethylamine (25: 75 v/v), with a flow rate of 1.0 ml/min. The λmax for UV detection was set at 268 nm. The column temperature was kept ambient and injection volume was 20 μL.
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7

Quantifying Fructose by HPLC

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Fructose concentration was measured by HPLC (12000 Series, Agilent Technologies, Palo Alto, CA, USA) using a Shodex Asahipak NH2P-50 4E column (4.6 mm ID × 250 mm; Shodex, Kanagawa, Japan). The fructose were detected with a refractive index detector (RID; 1200, Agilent Technologies, Palo Alto, CA, USA) at 30 °C with a flow rate 1 mL/min of a mixture of acetonitrile (J.T. Baker Chemical Co. Phillipsburg, NJ, USA) and water (H2O/CH3CN = 40/60) as a mobile phase.
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8

HPLC Analysis of Catalpol and Puerarin

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The qualitative control of C-P was performed on HPLC (Agilent 1200, USA). Chromatographic conditions: column Agilent Zorbax SB-C18 (4.6 mm × 250 mm, 5 μm); eluent: water and acetonitrile (Adamas-beta Co., Ltd, Shanghai, China) for gradient elution; the monitoring wavelength was set at 210 nm for catalpol and puerarin; flow rate was 1.0 ml/min and the column temperature was 30℃; the sample size was 10 μl. The HPLC analysis was validated and met the methodological requirements.
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9

Quantifying Reducing Sugars by UHPLC-RID

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The reducing sugar (xylose, arabinose, glucose, and fructose) contents were measured before and after heat treatment using a 1260 Infinity II preparative ultra-high performance liquid chromatography and reflective index detector (UHPLC-RID) system (Agilent, Santa Clara, CA, USA) with a modified protocol described by Chua et al. [21 (link)]. Before injection, 1.0 mL of each sample was filtered through a 0.2 μm Minisart RC 15 syringe filter (Sartorius, Goettingen, Germany), and then, 200 μL of each filtered sample was mixed with 200 μL of deionised (DI) water (arium®, Sartorius Stedim Biotech, Goettingen, Germany) and 600 μL of pure acetonitrile (Tedia, Fairfield, OH, USA) and kept at 4 °C for more than 2 h to allow protein precipitation. Each sample was centrifuged at 10,000× g at 4 °C for 15 min to remove the precipitate, and the collected supernatant was injected to the UHPLC system for sugar analysis. The sugars were separated using a Zorbax Eclipse Plus C18 column (150 × 4.6 mm, Agilent, Santa Clara, CA, USA) using a mobile phase containing 80% acetonitrile and 20% DI water at a flow rate of 1.4 mL/min at 40 °C. A series of external xylose, arabinose, glucose, and fructose standards were used for identification and quantification.
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10

Phosphoric Acid Quantification Protocol

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Phosphoric acid (for analysis, 85% solution in water, density 1.680) was purchased from Acros Organics (Fisher Scientific France, Illkirch, France). Deionized water (18 M) was produced by a Milli-Q apparatus (Millipore, Bedford, MA, USA). Acetonitrile was purchased as LC-MS grade from VWR (Fontenay-sous-bois, France). Phosphoric acid samples were prepared at a concentration of 5 mM using a volume of 0.035% of the initial Phosphoric acid solution in water/Acetonitrile (50/50 v/v). This 5 mM solution of Phosphoric acid was enriched with 50 µM ammonia to perform the collision induced experiments (CID) on the ammonia adducts of multiply charged Phosphoric acid cluster anions. Ammonium hydroxide solution 29.3% NH3 was from Sigma Chemical (St. Louis, MO, USA). The mixture of hexakis-(fluooalkyloxy)-phosphazines (Tuning Mix, Agilent Technologies) was diluted to 1:4 with 95% Acetonitrile in water and was used either alone or in mixture with Phosphoric acid.
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