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19 protocols using 1220 infinity lc

1

Agilent 1220 Infinity LC HPLC Analysis

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Example 23

Agilent 1220 Infinity LC

High performance liquid chromatography (HPLC) was conducted using an Agilent 1220 Infinity LC. Flow rate range was 0.2-5.0 mL/min, operating pressure range was 0-600 bar, temperature range was 5° C. above ambient to 60° C., and wavelength range was 190-600 nm.

Agilent 1220 Infinity 2 LC

High performance liquid chromatography (HPLC) was conducted using an Agilent 1220 Infinity 2 LC equipped with diode array detector (DAD). Flow rate range is 0.2-5.0 mL/min, operating pressure range is 0-600 bar, temperature range is 5° C. above ambient to 60° C., and wavelength range is 190-600 nm.

The HPLC method used is shown below:

ParameterValue
Mobile phase A0.05% TFA in distilled water
Mobile phase B0.05% TFA in CAN
DiluentACN:water (1:1 vol)
Injection volume5 μL
Monitoring wavelength210 nm
ColumnHalo C-18, 4.6 × 150 mm, 3.5 μm
Flow rate1.00 mL/min
Time (min)% Phase A% Phase B
Gradient0955
Method0.1955
3955
18595
20595
20.1955
25955

Purity analysis of the different solid-state forms indicated >98% purity of all forms and patterns.

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2

Analytical Techniques for Compound Characterization

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Ethanol (Wako), acetonitrile (Wako), mEthanol (Wako), sulfuric acid (Wako), acetone (Wako), trifluoroacetate (Tokyo Chemical Industry), dimethyl sulfoxide (Wako), MTT (3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide), LPS and Griess reagent were all purchased from Sigma (St. Louis, MO, USA). An ELx 800 Universal Microplate Reader (BIO-TEK), VD-250R Freeze Dryer (TAITEC), US-105 Sonicator (SND), 5420 Centrifuge (IMOTO), R-300 Rotavapor (BUCHI), V-300 Vacuum Pump (BUCHI), High Performance Flash Chromatography (HPFC) system (Biotage AB), Medium Pressure Liquid Chromatography (MPLC) system (EPCLC, Yamazen), Preparative High Performance Liquid Chromatography (PHPLC) system (EPCLC, Yamazen), 1220 Infinity LC (Agilent Technologies), NMR spectrometer (Bruker DRX-600; Bruker Daltonics, Billerica MA, USA), Quadrupole time-of-flight (qTOF) mass spectrometer (Agilent Technologies, USA) and JASCO DIP-370 polarimeter (JASCO, Tokyo, Japan) were used.
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3

Astaxanthin Content Analysis by HPLC

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The astaxanthin content was analyzed by HPLC system (1220 Infinity LC, Agilent Technologies, USA) with a diode-array detector (DAD, threshold 0.001 mAU). The chromatographic separation was achieved on Eclipse Plus C18 column (5 µm, 4.6 × 250 mm, Agilent Technologies). The extracts (10 µL) were injected onto the column with 0.8 mL/min flow rate. The optical density at 475 nm detected by DAD with 4 nm of slit width and 4 nm band width was used for quantifying astaxanthin. The mobile phase consisted of solvent A (acetone HPLC grade) (Sigma-Aldrich) and solvent B (methanol: H2O, 9:1) (Sigma-Aldrich) with the following 30 min gradient: 0 min (80% solvent B, 20% solvent A), 10 min (50% solvent A, 50% solvent B), and 20 min (20% solvent B, 80% solvent A). Standard astaxanthin (Sigma-Aldrich) was used to compare the concentrations of astaxanthin in isolated algal samples. The peaks were identified from the retention time and log k’46 (link).
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4

Quantification of Inhibitory Compounds via HPLC

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Inhibitory compounds were quantified by a 1220 Infinity LC high-performance liquid chromatography system (Agilent Technologies, CA, USA) equipped with a Zorbax Eclipse Plus C18 (4.6 mm x 250 mm, 5 μm) (Agilent Technologies, CA, USA). The mobile phases were A: (methanol 100 %) and B: formic acid-water (2.5 % v/v); the operating conditions were as follows: flow rate of 0.8 ml/min at 30 °C, with a flow gradient during 55 min from 0 % to 48 % of phase B, a pressure of 1200 ± 100 psi, and detection by a diode array detector (DAD) at wavelength screenings at 262, 275, 295 and 342 nm.
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5

Protein Characterization via MALS

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Multi-angle static light scattering experiments were completed on a Wyatt Technology light scattering instrument with a Dawn Heleos-II detector and Optilab T-rEX dRI detector, in conjugation with an 1220 Infinity LC (Agilent technologies) with a Shodex KW404-4F semi-micro SEC column. A total of 50 μg of protein was analyzed in either PBS pH 7.2 or 100 mM sodium citrate in PBS at pH 5.0, diluted from concentrated stocks in their respective purification buffers.
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6

SEC-MALS Analysis of Cg-mtEXO Mutants

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The molecular masses of Cg-mtEXO mutants of the Dss1 HTH-Suv3 RecA1 interface were determined by size-exclusion chromatography with multi-angle light scattering (SEC-MALS, Supplementary Fig. 7). Recombinant proteins and protein complexes (100 µl, 1 mg ml−1) were fractionated at room temperature on Superdex 200 Increase 10/300 column (GE Healthcare) equilibrated with SEC buffer that contained 20 mM Tris-HCl (pH 7.5), 150 mM NaCl and 1 mM DTT at 0.5 ml min−1. Elution of proteins was monitored by the following in-line detectors: UV 280/254 nm (1220 Infinity LC, Agilent Technologies), light scattering (DAWN HELEOS II, Wyatt Technology) and differential refractometer (Optilab T-rEX, Wyatt Technology). Data analysis and molecular weight calculations were performed using ASTRA 6 software (Wyatt Technology) using differential refractive index for a concentration calculation.
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7

Synthesis and Purification of Compounds

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All reagents were purchased from commercial sources and were used without further purification. All the reagents and chemicals for synthesis were purchased from Sigma-Aldrich (St. Louis). All other cell culture reagents, syringes, and disposable items were purchased from VWR (Chicago, IL). All preparative HPLC was performed with an Agilent 1200 Instrument with a reverse-phase XBridge OBD preparative column (19 × 150 mm, 5 μm) manufactured by Waters (Milford, MA) with UV detection at 254 nm. LC/MS was performed on an Agilent 1220 Infinity LC with a reverse-phase XBridge Shield RP18 column (3.0 × 50 mm, 3.5 μm). The purity of all final compounds was ≥95% as determined by analytical HPLC on a reverse-phase column with the binary system ammonium acetate (20 mM, pH – 7) and acetonitrile as eluent.
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8

Measuring Hydroxyl Radical Generation

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Generation of hydroxyl radical was estimated by measuring the conversion of salicylic acid into 2,5-DHBA [30] (link). H9c2 cells were treated with NE for appropriate duration and then loaded with salicylic acid (100 µM). After 2 h, cells were homogenized with ice-cold PBS (0.5 ml) and deproteinized by the addition of 10% perchloric acid containing 1 mM EDTA and 100 mM sodium pyrosulfite (1.5 ml). The deproteinized extracts were then centrifuged at 9000g for 10 min at 4 °C and 1 M HCl (0.4 ml) was added to the supernatant. The resulting solution was then extracted with 3 ml diethyl ether by vertexing for 1 min. The organic phase was separated by centrifuging at 3000g for 5 min, collected and evaporated to dryness under vacuum. The dried residue was dissolved in 0.03 M citrate/acetate buffer, pH 3.6 (the mobile-phase) and analyzed by HPLC using a zobrax C18 column (150×4.6 mm, 1220 Infinity LC, Agilent technologies, USA). The flow rate was kept at 1.0 ml/min. The 2,5-DHBA was detected at a wavelength of 315 nm and its content was expressed as nmol of DHBA/µmol of salicylic acid. The assay was validated by the estimation of hydroxyl radical generated by treating cells with 20 µM CuSO4 and 1 mM l-ascorbate at 37 °C for 4 h [31] .
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9

Extraction and Analysis of L. enzymogenes Metabolites

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L. enzymogenes OH11 and its mutants were grown in 1/10 TSB for 1 day, and an aliquot of 200 l was spread on a solid NYGA plate (bacteriological peptone, 5 g/L; yeast extract, 3 g/L; glycerol, 20 g/L, and agar 15 g/L). The plates were incubated at 28 °C for 2 days. To extract the metabolites, the solid media were collected and extracted with methanol. The methanol extract was dried with a rotavapor (Buchi, Rotavapor R-200) to afford the crude extract, which was dissolved in 2 mL methanol containing 0.05% TFA. A 20 μl aliquot of each of the extracts was analyzed by HPLC (1220 Infinity LC, Agilent Technologies) using a reversed-phase column (Cosmosil 5C18-AR-II, 4.6 ID × 250 mm). Water/0.01 M TFA (solvent A) and acetonitrile/methanol = 1:1 (solvent B) were used as the mobile phases with a flow rate of 1.0 mL/min. The HPLC program was as follows: 57% B in A in the first 5 min, 57–100% B in 5–32 min, 100% B in 32–40 min, back to 57% B at 41 min, and maintained to 48 min. The metabolites were detected at 280 nm on a UV detector. LCQ-MS was used to verify the mass of the peak of WAP-8294A2 and analogs.
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10

Quantification of Phytoalexins in S. bambusicola

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The supernatant of liquid fermentation was extracted with ethyl acetate until it turned colorless. The extracts were concentrated to dryness and the residue was dissolved in acetonitrile. The concentrations of PQs were measured by high-performance liquid chromatography (HPLC) with standard reagents11 (link). Agilent Technologies 1220 Infinity LC instrument was used to perform HPLC. The PQs component of S. bambusicola S4201 were analyzed by HPLC at 30 °C using a C18 column (5 µm, 4.6 × 250 mm) (SunFire, Waters, USA), with a flow rate of 1 mL/min and injection volume of 10 µL.
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