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7 protocols using fetal bovine serum (fbs)

1

Isolation and Culture of Primary Satellite Cells

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Primary satellite cells were prepared from extensor digitorum longus (EDL) muscles from C57BL/6 or C57BL/6-GFP mice by dissociation with type 1 collagenase (Worthington), as described previously [19 (link)]. Briefly, isolated muscles were dissociated by incubation in 0.2% type 1 collagenase/DMEM for 80–90 min and unraveled by gentle pipetting. Single muscle fibers were then isolated and plated on Matrigel-coated plastic dishes. Isolated muscle fibers with primary satellite cells were cultured in DMEM (high-glucose, sodium pyruvate and GlutaMAX supplement, Thermo Fisher Scientific) supplemented with 20% fetal bovine serum, 1% chicken embryo extract (US Biological) and 1% penicillin-streptomycin (Thermo Fisher Scientific) at 37°C with 5% CO2 with or without 5 ng/ml LIF (PROSPEC) for 5 days.
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2

Isolation and Culture of Mouse Satellite Cells

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Quiescent satellite cells were collected from the skeletal muscles of 8-week-old male SJS-model mice using fluorescence-activated cell sorting and an SM/C-2.6 antibody, as described previously [31 (link)]. The SM/C-2.6 antibody was provided by Dr. Fukada. These satellite cells were seeded on rhLaminin-521 (Thermo Fisher Scientific)-coated plates and cultured in satellite cell growth media (Dulbecco’s modified Eagle’s medium (DMEM), 20% fetal bovine serum, 10% horse serum, chicken embryo extract (United States Biological, Salem, MA, USA), and penicillin/streptomycin) containing 2.5 µg/mL recombinant human FGF (ProteinTech, Rosemont, IL, USA), as previously described [32 (link),33 (link)]. Satellite cells were differentiated to myotubes by culturing in high glucose DMEM (Thermo Fisher Scientific), supplemented with 2% horse serum (Thermo Fisher Scientific) and penicillin/streptomycin. To rescue perlecan-null myotubes, recombinant perlecan protein (20 μg/mL; purified and provided by Dr. Sasaki) was added at the start of the differentiation process. Calcium imaging experiments were performed 12–16 h after adding 70 µg/mL laminin/entactin complex (Corning Inc., Corning, NY, USA) and 10 ng/mL recombinant neural agrin (R&D Systems, Minneapolis, MN, USA).
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3

Silkworm Embryo Development Transcriptome

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DaZao, a bivoltine strain of the silkworm, was obtained from the Silkworm Gene Bank of Southwest University, Chongqing, China. The non-diapause eggs were divided into two groups; one group was incubated at 25 °C (diapause induction temperature), while the other group was incubated at 15 °C (non-diapause induction temperature). All the eggs were incubated at the same light condition (continuous darkness). Four groups were prepared from embryos exposed to the two temperature treatments (25 and 15 °C) and in the two phases (the blastokinesis (BK) and head pigmentation (HP) phases). Due to the non-uniform development of embryos, we dissected a great deal of the silkworm eggs and selected the embryos showing the same morphology at the same developmental stage for subsequent sequencing. The resulting four groups were labeled BK25, BK15, HP25, and HP15. Each group comprised 100 embryos. All samples were stored at −80 °C for further use. The cell line, BmE, derived from the silkworm embryo, was cultured at 27 °C in Grace insect medium (Life Technologies, Shanghai, China) supplemented with 10% fetal bovine serum (United States Biological, Swampscott, MA, USA), penicillin (200 U/mL), and streptomycin (200 U/mL).
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4

Culturing Drosophila OSC Cell Line

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OSCs (Saito et al, 2009 (link); RRID:CVCL_IY73) were cultured at 26°C in Shields and Sang M3 Insect Medium (US Biological) supplemented with 10% fly extract (Saito et al, 2009 (link)), 10% fetal bovine serum (Funakoshi), 10 mU/ml insulin, and 0.6 mg/ml glutathione.
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5

Culture of Breast Cancer Cell Lines

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Hec1A, AGS, and HCC1500 cells were acquired from ATCC. All other cell lines (HCC1806, SUM149, BT549, HCC1937, HCC70, BT20, MCF7, MDAMB453, EFM19, ZR75-1, and T47D) were acquired from the Brugge Lab at Harvard Medical School, and were authenticated by STR analysis. All cell lines were of female origin. Cell lines were regularly tested for mycoplasma using the MycoAlert Mycoplasma Detection Kit (Lonza). Cells were grown in human plasma-like medium according to the published formulation (Cantor et al., 2017 (link)) with 5% dialyzed FBS (Sigma) and Pen/Strep (Invitrogen) at 37 degrees C with 5% CO2. Media was changed at least every two days. As needed, cells were incubated in RPMI media (R9010-01, US Biological Life Sciences) with or without serine and glycine with 5% dialyzed FBS and Pen/Strep. Cells were counted using a Z1 Coulter Particle Counter (Beckman Coulter) and growth rates were calculated using the following formula: growth rate = ln(final cell number/initial cell number)/time.
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6

Culture of Breast Cancer Cell Lines

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Hec1A, AGS, and HCC1500 cells were acquired from ATCC. All other cell lines (HCC1806, SUM149, BT549, HCC1937, HCC70, BT20, MCF7, MDAMB453, EFM19, ZR75-1, and T47D) were acquired from the Brugge Lab at Harvard Medical School, and were authenticated by STR analysis. All cell lines were of female origin. Cell lines were regularly tested for mycoplasma using the MycoAlert Mycoplasma Detection Kit (Lonza). Cells were grown in human plasma-like medium according to the published formulation (Cantor et al., 2017 (link)) with 5% dialyzed FBS (Sigma) and Pen/Strep (Invitrogen) at 37 degrees C with 5% CO2. Media was changed at least every two days. As needed, cells were incubated in RPMI media (R9010-01, US Biological Life Sciences) with or without serine and glycine with 5% dialyzed FBS and Pen/Strep. Cells were counted using a Z1 Coulter Particle Counter (Beckman Coulter) and growth rates were calculated using the following formula: growth rate = ln(final cell number/initial cell number)/time.
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7

Starvation Conditions for Cell Metabolism

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Glutamine starvation was described previously [16 (link)]. Briefly, cells were washed once with PBS and cultured in complete medium or glutamine-free medium. For the Glucose starvation experiment, DMEM without Glucose (11966; Invitrogen, Carlsbad, CA) was supplemented with 10% dialyzed FBS (Gemini) to make Glucose-free medium. Glucose (Sigma) was added back to the Glucose-free medium to make the complete medium (25 mM) or low-Glucose medium (1 mM). For the amino acid starvation experiments, DMEM Ham’s F-12 medium without amino acids (D9811-01; US Biological, Salem, MA) was supplemented with 10% dialyzed FBS. Different amino acids (purchased from Sigma) were added back to amino acid–free medium to make a medium without glutamine, serine, asparagine, aspartate, arginine, leucine, or glycine. To make medium without essential amino acid, the amino acid-free medium was supplemented with nonessential amino acid solution (Sigma M7145) and 4 mM L-glutamine.
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