The largest database of trusted experimental protocols

15 protocols using nonfat milk

1

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ten µl of each sample were loaded onto 7.5%, 12% Tris-glycine SDS-PAGE gels or 4–20% gradient gels (Biorad) depending on the molecular weight of the proteins of interest. Proteins were transferred to PVDF membranes and subsequently blocked with casein blocker (Thermo Scientific) or non-fat milk (Cell Signalling Technologies) for 1 hr at room temperature. Membranes were probed with primary antibody overnight at 4 °C and following washing steps were incubated with the appropriate HRP-conjugated secondary antibody for 2 hr at room temperature. The signal was detected using a CCD camera and Luminata Crescendo (Merck Millipore) or West Femto (Pierce) chemiluminescent HRP substrate depending on the intensity of the signal.
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins of cells were extracted by the RIPA lysis buffer (Beyotime, Shanghai, China) containing 1:1,000 protease/phosphates inhibitors (Apexbio, TX, USA). BCA Protein Quantification Kit (Vazyme, Jiangsu, China) was used to measure the concentration of proteins. 25–50 µg proteins mixing with loading buffer (Epizyme, Shanghai, China) were separated by 7.5%−12.5% SDS-PAGE (Epizyme, Shanghai, China) gel electrophoresis. The proteins were then transferred to PVDF membranes (Millipore, MA, USA), blocked with 5% nonfat milk (Cell signaling technology, MA, USA) for 2 h and incubated with primary antibodies at 4 °C overnight. The PVDF membranes were subsequently incubated with horseradish peroxidase-conjugated secondary antibodies for 2 h. The proteins were visualized using ultra-sensitive chemiluminescence (ECL) reagent (Uubio, Jiangsu, China) and detected by image analysis system Tanon 4800 (Tanon, Shanghai, China). Anti-GAPDH/β-actin antibody was used for normalization. The detailed antibody information was displayed in Supplementary Table S4.
+ Open protocol
+ Expand
3

Immunoblotting and Immunoprecipitation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein used was the same as described above. For immunoblotting, the proteins were separated on a 4–15% polyacrylamide gradient gel (4561086, Bio-Rad, USA) and transferred onto a nitrocellulose membrane (10600002, Amersham, USA). The membrane was blocked with 5% non-fat milk (9999, Cell Signaling, USA) in TBST and incubated with the monoclonal antibodies (1:500 dilution) over night at 4°C. The membrane was washed three times for 5 min each with TBST. HRP-conjugated anti-mouse IgG secondary antibody was added for 1 h at room temperature. The membrane was washed three times again with TBST before being treated with ECL (RPN3243, GE Healthcare, USA) and scanned by a Typhoon scanner (FLA 9500, GE Healthcare, USA). For immunoprecipitation, the antibodies were added to the protein extract at the previously described concentration and incubated for 2 h at 4°C before incubation with protein A-conjugated beads for another 1 h. The beads were collected by centrifugation at 2000 g for 2 min at 4°C and washed three times with TBST before boiling in SDS loading buffer for 10 min. The samples were then analyzed by 4–15% SDS-PAGE and silver staining as described (Chevallet et al., 2006 (link)).
+ Open protocol
+ Expand
4

Western Blot Analysis of Mitochondrial Dynamics Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary hippocampal neurons were lysed in lysis buffer (10 mM Tris at pH 7.4, 100 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM NaF, 20 mM Na4P2O7, 1% Triton X-100, 1% glycerol, 0.1% SDS, 0.5% deoxycholate, 1 mM phenylmethylsulfonyl fluoride) supplemented with protease inhibitor cocktail (Sigma-Aldrich) and phosphatase inhibitor cocktail (Sigma-Aldrich) as previously described [40] (link). The extracted proteins were diluted into indicated amounts and separated on 8–12.5% SDS/PAGE and transferred onto polyvinylidene difluoride (PVDF) blotting membranes (BioRad). The membranes were blocked in 5% non-fat milk (Cell Signaling) dissolved in Tris-buffered saline (pH 7.4) containing 0.1% Tween 20 for 1 h at room temperature and probed with different antibodies: anti-DLP1 (1:3000, BD Biosciences), anti-phospho-Drp1 (Ser 616) (1:1000, Cell Signaling), anti-OPA1 (1:1000, BD Biosciences), anti-Mfn1 (1:1000, Novus Biologicals), anti-Mfn2 (1:1000, Sigma-Aldrich), anti-VDAC (1:1000, Cell Signaling), anti-cleaved-caspase-3 (Asp175) (1:1000, Cell Signaling), and anti-β-actin (1:10,000, Sigma-Aldrich). ECL (GE Healthcare) and Western Bright ECL (Advansta) were used to develop the film. Quantification analysis was performed on scanned films using Image J (NIH).
+ Open protocol
+ Expand
5

Western Blot Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were analyzed by gel electrophoresis and western blotting. To recite briefly, we used 4-15 % Mini-PROTEAN® TGX™ Precast Protein Gels (Bio-Rad, Hercules, CA) by running at 100 V for 60 min. Separated proteins were transferred to Immuno-Blot® PVDF Membrane (Bio-Rad) in the tank-blotting system for 16 h at 30 V. The membrane was blocked in blocking buffer (5 % w/v nonfat milk (Cell Signaling Technology, Danvers, MA) in 1X Tris Buffered Saline (TBS, Bio-Rad) with 0.1 % Tween-20 (Fisher Scientific)) for 1 h rt, rinsed in 1X TBS with Tween-20 (5 min, rt, shaking, 3x), stained with primary antibody overnight at 4 °C with shaking, rinsed in 1X TBS with Tween-20 (5 min, rt shaking, 3x), stained with a secondary antibody for 1 h rt with shaking in dark, rinsed in 1X TBS with Tween-20 (5 min, rt shaking, 3x), and dried on a clean paper towel in dark. The primary and secondary antibodies were diluted in the blocking buffer. Detailed information on the antibodies and their dilution factors are listed in the next section. Dried membranes were imaged using Azure Biosystems c600 (Thermo Fisher).
+ Open protocol
+ Expand
6

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
After 24 h, cells were harvested and dissolved in lysis buffer (100 mM Tris-HCl, pH 6.8, 4% SDS, 20% glycerin, and 200 mM dithiothreitol). Protein concentration was measured using the Pierce BCA Protein Assay Kit (Thermo Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. Samples were mixed with Laemmle’s loading buffer and boiled for 7 min. Equal amounts (20–40 µg) of protein extracts were loaded to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE, 12% gel) at 100 mV, followed by blotting onto nitrocellulose membranes for 1 h 50 min at 110 V on ice. After transfer, nitrocellulose membranes stained with Ponceau S. Membranes were blocked for 1 h with 5% nonfat milk (AppliChemGmbH, Darmstadt, Germany, A0830) in tris-buffered saline (TBS) at room temperature, probed overnight with the appropriate primary antibodies (1:3000–1:5000) and followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, anti-mouse 7076S or anti-rabbit 7074S, 1:4000) for 1 h with 2.5% nonfat milk in Tris-buffered saline (TBS) at room temperature. Detection was visualized with ECL (Amersham Biosciences, Piscataway, NJ, USA) and ChemiDoc MP Imaging System (BioRad). The quantitative analysis of Western blot data was accomplished using ImageJ Software (NIH, Bethesda, Rockville, MD, USA).
+ Open protocol
+ Expand
7

Western Blot Analysis of NLRP3 Inflammasome

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates from cells or liver tissues were separated on a 4%–12% NuPAGE Bis‐Tris protein gel (Invitrogen) and transferred to a polyvinylidene difluoride membrane (GE Healthcare, Chicago, IL, USA). Blots were blocked with 5% nonfat milk (Nestle, Jacksonville, IL, USA), then incubated with primary antibodies in Tris‐buffered saline containing 0.1% Tween 20 (Sigma) and 5% nonfat milk, followed by HRP‐conjugated anti‐rabbit antibody (Cell Signaling, Danvers, MA, USA, 7074S, at 1:3000 dilution) or anti‐mouse antibodies (Cell Signaling, 7076S, at 1:2500 dilution). Primary antibodies used in this study were anti‐NLRP3 mouse antibody (Adipogen, AG20B0014C100, 1:1000); anti‐ASC rabbit antibody (Adipogen, AG25B0006C100, 1:1000); anti‐Casp1 (p10) mouse antibody (Adipogen, AG20B0044C100, 1:1000); anti‐tubulin rabbit polyantibody (Santa Cruz, Dallas, TX, USA, SC‐5286, 1:200); anti‐Nek7 rabbit antibody (Abcam, Cambridge, MA, USA, ab133514, 1:10000); and anti‐IL‐1β goat antibody (R&D systems, Minneapolis, MN, USA, AF401NA, 1:2000).
+ Open protocol
+ Expand
8

Western Blot Protein Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were suspended and then lysed in RIPA buffer (Beyotime, Beijing, P.R. China), which was supplemented with protease inhibitor cocktail (Sigma-Aldrich). Extraction of protein was made by SDS-PAGE, and the protein was transferred to a PVDF membrane (Millipore, Boston, MA, USA). The membrane was blocked with 5% (w/v) nonfat milk (Cell Signaling Technology, Danvers, MA, USA). Next, the membranes were incubated with primary antibodies at 4°C overnight, followed by incubation with a secondary antibody. In order to visualize the protein bands, Clarity™ Western ECL substrate (Bio-Rad, Hercules, CA, USA) was employed. The level of protein was quantified using ImageJ software and normalized with GAPDH.
+ Open protocol
+ Expand
9

Protein Quantification and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein was quantified by Bradford Protein Assay (Bio-Rad, Hemel Hempstead, UK). For protein extraction, samples (40 mg) were heated to 95°C for 10 minutes and denatured in sodium dodecyl sulphate (SDS) sample buffer (Invitrogen Ltd, Paisley, UK). The samples were loaded on a NuPAGE 4 to 12% Bis-Tris gel (Invitrogen) for electrophoresis and transferred to a PVDF membrane. The membrane was blocked using non-fat milk (Cell Signalling, Hitchin, UK) dissolved in Tris-buffered saline with Tween (TBS-T; 10 mmol Tris-HCl, 150 mmol NaCl, 0.1% Tween; pH 8.0), then probed with primary antibodies (1:1000), followed by an HRP-conjugated secondary antibody. Loading controls were α-tubulin or β-actin (1:10000, Sigma-Aldrich). Blots were visualized with the enhanced chemiluminescence (ECL) system (Santa Cruz, USA), and the protein bands were captured with GeneSnap and analysed using GeneTools software (Syngene, Cambridge, UK).
+ Open protocol
+ Expand
10

Western Blot Analysis of Dendritic Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
One million BM-DCs were stimulated with 1 or 4 μg/ml Man- and Gal-LPS, respectively, for the indicated time period. Cells were then processed as described previously with adaptation of lysis buffer volume to 75 μl (69 (link)). Cell lysate equivalent to two hundred thousand cells (15 μl) was subjected to SDS-PAGE using a 4–15% gradient TGX minigel (Bio-Rad) for 90 min at 100 V. Proteins were transferred onto nitrocellulose membrane (GE Healthcare) at 100 V for 30 min. The membranes were blocked with 5% nonfat milk (Lonza) in PBS containing 0.05% Tween 20 (PBS-T) for 1 h at 25 °C. The blocked membranes were washed four times by incubating in PBS-T for 5 min each. Membranes were then incubated with the primary antibodies in PBS containing 1% bovine serum albumin for 1 h at 25 °C at a dilution of 1:1000 for Syk, phospho-Syk, IκB, and β-actin and 1:5000 for p38 and phospho-p38. Membranes were washed as above and probed with anti-rabbit IgG conjugated with horseradish peroxidase (Cell Signaling) in 5% nonfat milk in PBS-T at a dilution of 1:3000 for 1 h at 25 °C. Membranes were washed as above and incubated with the ECL detection reagent (GE Healthcare) and imaged using Fluorochem E (ProteinSimple).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!