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4 protocols using histone h3 d1h2 xp

1

Histone H3 Immunofluorescence Protocol

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CFIm25: NUDT21 (2203C3): sc81109 (Santa Cruz); 1:500.
H3: Histone H3 (D1H2) XP (Cell Signaling Technology); 1:10,000.
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2

Analyzing Glucocorticoid Receptor Isoforms

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tsA201 cells transfected with recombinant hGR isoforms were either lysed in ice-cold lysis buffer (Agilent) supplemented with cOmplete Protease Inhibitor Cocktail (Roche, Indianapolis, IN) and supernatants harvested and normalized, or were fractionated into nuclear, cytoplasmic, and membrane extracts using a cell fractionation kit (Cell Signaling Technology, Danvers, MA). Proteins were run on a 4–20% BioRad Criterion TGX gel (Hercules, CA), then transferred to a polyvinylidene difluoride membrane (BioRad). Membranes were blocked with 5% nonfat dry milk, washed, and incubated overnight with Glucocorticoid Receptor (D8H2) XP (1:1000), MEK1/2 (D1A5) (1:1000), AIF (D39D2) XP (1:1000), or Histone H3 (D1H2) XP (1:2000) rabbit monoclonal antibodies (Cell Signaling Technology) in 5% nonfat milk or bovine serum albumin. A secondary anti-rabbit-HRP (GE Healthcare, Piscataway, NJ) in 5% nonfat milk at 1:2000 was used for protein visualization via chemiluminescence using the ECL Prime Western Blot Detection System (GE Healthcare).
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3

Multiparametric Immunofluorescence Microscopy

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Cells were fixed with 4% paraformaldehyde for 15 min, followed by 30 min of permeabilization with 0.1% Triton X-100. A 5% BSA solution in PBS was used for blocking for an hour before the cells were incubated overnight with primary antibodies at 4°C (anti-RNA polymerase II CTD repeat YSPTSPS [phospho S5], abcam ab513 at 1:1000 dilution, anti-phospho-histone H2AX [Ser139; anti-γH2AX], clone JBW301, Merck 05-636 at 1:1000 dilution, anti-Chk1 [phospho S345] antibody, abcam ab47318 at 1:500 dilution, anti-HP1α antibody, clone15.19s2, Merck 05-689 at 1:1000 dilution, anti-trimethyl-histone H3 [Lys9; D4W1U], Cell Signalling Technology 13969 at 1:800, anti-ATM [phospho S1981], abcam ab36810 at 1:500 dilution, Histone H3 [D1H2] XP, Cell Signalling Technology 4499 at 1:500 dilution). Fluorescent-tagged secondary antibodies (Alexa Fluor 546 goat anti-mouse/rabbit [A11030/A11010] and Alexa Fluor 647 goat anti-mouse/rabbit [A21236/A21245]) were incubated at room temperature for 1 h before imaging.
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4

Immunoblotting Techniques for Protein Profiling

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Total cell lysates were separated by SDS-PAGE and transferred to activated PVDF membranes using the TransBlot Turbo system (BioRad). Membranes were blocked and probed with primary and secondary antibodies according to standard techniques. Images were acquired using an Odyssey FC Imager (LI-COR) and quantified using Image J. Immunoblotting was performed with primary antibodies against actin (Sigma, A5441), pMET(T1234/1235) (D26)XP (Cell Signaling, #3077), MET (D1C2)XP (Cell Signaling #8198), p44/42MAPK(ERK1/2 - T202/204) (E10) (Cell Signaling, #9106), ERK1/2/MAP-Kinase (Sigma, #M5670), pY100 (Cell Signaling, #9411), FER (5D2) (Cell Signaling, #4268), pHistone H3(S10) (D2C8)XP (Cell Signaling, #3377), Histone H3 (D1H2)XP (Cell Signaling, #4499), cleaved caspase-3 (Asp175) (Cell Signaling, #9661), PARP1 (Cell Signaling, #9542), Aurora B/AIM-1 (BD Bioscience, #611082), pFAK(T397) (D20B1) (Cell Signaling, #8556), FAK (D2R2E) (Cell Signaling, #130095), MAP4K5 (KHS [E-5]) (Santa Cruz, sc-374070). Secondary antibodies were anti-rabbit and anti-mouse (GE Healthcare).
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