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8 protocols using epoxy resin

1

Ultrastructural Analysis of Bursal Tissue

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Tissue samples were fixed in 4% phosphate buffered glutaraldehyde at 4 °C overnight. PBS removed the excess fixative and the samples postfixed in 1% osmium-tetroxide for 2 h. After dehydration in graded ethanol, the bursal tissue was embedded in a mixture of araldite and epoxy-resin (Polysciences, Warrington, PA, USA). Ultrathin sections were contrasted by lead citrate and uranyl-acetate, studied using a Hitachi H-7600 electron microscope.
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2

Electron Microscopy of Arterial Samples

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After fixation of arterial samples in 2.5% glutaraldehyde (TED PELLA, CA, USA) in PBS (pH 7.2), specimens were post-fixed in 1% osmium tetroxide (Heraeus, Hanau, Germany), dehydrated in graded ethanol and propylene oxide (Acros Organics, USA), and then embedded in Epoxy resin (mix with Nadic Methyl Anhydride (NMA) and Dodecenyl Succinic Anhydride (DDSA) and DMP-30, all reagents from Polysciences (PA, USA). Serial ultrathin sections were cut using an LKB-III ultratome (LEICA, Wetzlar, Germany). Ultrathin sections were stained with uranyl acetate (TED PELLA, CA, USA) and lead citrate (TED PELLA, CA, USA) and were examined with the aid of a Hitachi H7600 electron microscope (Hitachi, Japan) at an accelerating voltage of 100 kV.
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3

Measurement of Postsynaptic Density Characteristics

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The sections of 100 μm thickness containing the sensorimotor cortex were collected from Bregma 0.98 mm to 0.14 mm and post-fixed with 1% aqueous osmium tetroxide for 1 h. The upper portions comprising cortical layers II/III were isolated for further processes. The samples were dehydrated in graded ethanol, washed with propylene oxide, and embedded in epoxy resin (Polysciences Inc., Warrington, PA, USA). Semi- and ultra-thin sections were cut with a diamond knife on a Reichert-Jung Ultracut E ultramicrotome (Leica-Microsystems, Wetzlar, Germany). Ultra-thin sections were collected on copper grids (200 mesh, TAAB, Burks, UK) and stained with lead citrate and uranyl acetate. Digital photographs at a magnification of 10,000× were obtained by a transmission electron microscope (Hitachi H-7100, Tokyo, Japan) at 100 kV. The thickness and width of the postsynaptic densities (PSDs) were measured using ImageJ software (NIH, Bethesda, MD, USA). The glutamatergic synapses were selected and the grayscale values across the synapses were measured. The PSD thickness was defined as the distance between the grayscale values of postsynaptic local maximum and the first local minimum. The PSD width was defined as the length of electron dense band along the postsynatic membrane (Jiang-Xie et al., 2014 (link)).
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4

Ultrastructural Analysis of Mouse Skeletal Muscle

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Two mice in each group with body weights similar to the median were selected as representative mice. A minimum of five tissue sites was randomly selected for imaging, and a representative image is presented in the figures. Samples of TA muscle were fixed with 2% glutaraldehyde in paraformaldehyde (Merck & Co. Inc., Kenilworth, NJ, USA) overnight at 4°C and post-fixed for 1 hour in 1% OsO4 resin (Polysciences Inc., Warrington, PA, USA). Samples were dehydrated in ethanol (Merck & Co.), embedded in rubber molds with epoxy resin (Polysciences Inc.), and polymerized in an oven at 60°C for 20 hours. Semithin sections (1 μm thick) were cut using a Leica Ultracut UCT (Leica Microsystems Inc., Buffalo Grove, IL USA) and stained with toluidine blue (Merck). Ultrathin sections (70 nm thick) were cut and mounted on coated copper grids (Nisshin EM, Tokyo, Japan) and double stained with 6% uranyl acetate (Ted Pella Inc., Redding, CA, USA) and lead citrate (Wako, Osaka, Japan). The ultrastructure of the tissue sections was observed using a JEM-1011 transmission electron microscope (TEM, JEOL, Tokyo, Japan) with an accelerating voltage of 80 Kv. Images were viewed using Camera-Megaview III software (EMSIS, Munster, Germany).
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5

Ultrastructure Analysis of Mouse Gut

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For electron microscopy studies, gut samples from control and DSS-treated C57BL/6 mice were placed in 4 % buffered glutaraldehyde for 72 hours. After washing in PBS, postfixation was made in 1 % osmium tetroxide for 2 hours. After being rinsed 3 times in PBS, the tissue samples were dehydrated in graded ethanol and embedded in epoxy resin (Polysciences Inc, Warrington, PA) using propylene oxide. Ultrathin sections were contrasted with uranyl acetate and lead citrate and examined using H-7600 Hitachi (Tokyo, Japan) electron microscope.
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6

Quantitative Histomorphometric Analysis

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Eight weeks following grafting, grafts underwent histomorphometric analysis.24 (link) Grafts were harvested and stored in 3% glutaraldehyde (Polysciences Inc., Warrington, PA). The grafts were post-fixed in 1% osmium tetroxide, dehydrated, embedded in epoxy resin (Polysciences), and cross-sectioned at 1μm. Slides were counter-stained with 1% toluidine blue dye and analyzed at 1000× using a Leco IA32 Image Analysis System (Leco, St.Joseph, MI) to quantify myelinated axon counts, width, density, and percent neural tissue by a blinded observer. For electron microscopy, graft samples 1cm from the proximal coaptation and immediately adjacent to the distal coaptations were collected and processed as just described. These samples were sectioned at 90 nm and stained with uranyl acetate and lead citrate. Ultramicrographs were taken with a Joel 1200EX electron microscope at 10,000× magnification.
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7

Exosome Morphology Analysis by TEM

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For morphology analysis of puri ed exosomes from AMSCs, after xing with 2.5% glutaraldehyde and dehydration in ascending sequence of ethanol, the samples were further proceed for epoxy resin (PolySciences, Warrington, PA, USA) embedding in accordance with the manufacturer's instruction.
Ultrathin sections (a thickness of maximum 70 nm) were loaded onto formvar coated copper grids, contrasted with uranyl acetate, and visualized by Zeiss-EM10C (Germany) transmission electron microscope (TEM).
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8

Tissue Fixation and Embedding

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The tissue samples were fixed with 4% phosphate-buffered glutaraldehyde at 4 °C overnight. PBS was used to remove the excess fixative, and the samples were post-fixed in 1% osmium tetroxide for 2 h. The samples were dehydrated in graded ethanol and embedded in a mixture of araldite and epoxy resin (Polysciences, Warrington, PA, USA). One-micron-thick sections (semi-thin sections) were stained with 1% toluidine blue.
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