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12 protocols using cd140a

1

Tendon Cell Phenotyping by Flow Cytometry

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Cultured tendon cells were stained using antibodies against CD45, CD31, CD11b, Sca1, CD29,, CD90, CD105, and CD140a (Biolegend). After gating out dead cells and debris, isotype controls were used to determine CD45- CD31- CD11b- Triple Negative (TN), non-hematopoietic cells for further analysis. Experiments were run on an LSRFortessa X-20 (BD Biosciences) and Attune NxT (ThermoFisher) and data was analyzed using FCSExpress software (DeNovo) and FlowJoV10 (TreeStar).
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2

Isolation of Murine Lung Cell Types

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Murine lung tissue was digested into a single-cell suspension as previously described using dispase (Corning catalog #354235), collagenase (Roche catalog #10103578001), and DNase (Roche catalog #10104159001). When isolating AT2 cells from SftpcCreERT2:R26RTdTomato mice, the animals received 200μg/gm tamoxifen (Sigma-Aldrich catalog #T55648) in corn oil (Sigma-Aldrich catalog #C8267) via gavage 3 days prior to being euthanized. Tomato+ cells were isolated using flow cytometry (MoFlow Astrios with Summit v 6.3.0.16900 software). To isolate AT2 cells from mice we stained single-cell suspensions of murine lung tissue and gated based on the following criteria: positive for EpCAM-APC (BioLegend catalog #118213) and negative for CD31-PE (eBioscience catalog #12-0311-81), CD45-PE (eBioscience catalog #12-0451-81), podoplanin-PE (eBioscience catalog #12-5381-80), Sca1-PE (eBioscience catalog #12-5981-81), CD24-PE (BioLegend catalog #119307), and DAPI (BioLegend catalog #422801) as previously described81 (link). To isolate mesenchymal cells we sorted for cells that were positive for CD140a (BioLegend catalog #135907) and negative for and DAPI (BioLegend catalog #422801). Antibody concentrations are in Supplementary Table 2.
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3

Pancreas Single-Cell Isolation and Sorting

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For mouse pancreas dissociation into single cell suspensions, pancreata were minced with scissors and incubated with trypsin-EDTA for 10 min at 37°C, followed by treatment with collagenase P (Sigma, 11213857001) 1 mg/mL for 20–30 min at 37°C, and then filtered through 70 and 40 μm filters. Purified cells were incubated with the fluorescent β-galactosidase substrate C12FDG (Invitrogen D-2893) at 33 µM for 1 hour at 37°C, followed by sorting based on C12FDG and tdTomato or Epcam fluorescence, using an Aria III sorter (BD Biosciences), with gating for CD31 and CD45 cells to exclude endothelial and immune cells. Imaging flow cytometry was performed as previously described,42 (link) and imaged by ImageStreamX flow cytometry (Amnis). Antibodies used for FACS: Cd45 (eBiosciences 25-0451-82), Cd31 (eBiosciences 17-0311-80), Epcam (Biolegend 118212), Cd140a (Biolegend 135919), Pdpn (Biolegend 127423), F4/80 (Biolegend 123117) and CK19 (DSHB TROMA III).
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4

Immunofluorescence Staining of Tissue Sections

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The tissue sections were dried at RT for 20 minute and then blocked with 1% BSA PBS for 3×10 minutes, the sections were incubated with primary antibody at 4 °C overnight. The sections were washed with 1% BSA PBS buffer and then incubated with the secondary antibody conjugated with Alexa-dye for 1 hour at RT in dark room. The sections were washed with 1% BSA PBS buffer and stained with 0.1% DAPI for 5 minutes at RT in dark room. The sections were then washed and mounted in anti-fade mounting media (Vector Laboratories). The stained slides were observed using an Olympus IX81 microscope or scanned using an iCys Research imaging cytometer (CompuCyte).
The following antibodies were used in this study: Col2 (1:100, Cat. ab34712, Abcam), osteocalcin (1:200, Cat. Ab14173, Abcam), Kitl (1:100, Cat. sc-13126, Santa Cruz), CXCL12 (1:100, Cat. sc-6193, Santa Cruz), α-SMA (1:100, Cat. ab5694, Abcam), CD146 (1:100, Cat. 134702, Biolegend), CD140a (1:100, Cat. 135902, Biolegend), Sca-1 (1:100, Cat. 108102, Biolegend), CD31 (1:150, Cat. 5550274, BD). The secondary antibodies conjugated with Alexa fluor 488 and Alexa fluor 555 were from Invitrogen. In study with mouse primary antibody, the M.O.M. immunodetection kit (Cat. BMK-2202, Vector Laboratories) was used to eliminate the endogenous mouse immunoglobulins background in the tissue.
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5

Fibroblast Purity Analysis by FACS

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To determine the purity of the primary fibroblasts from young and old mice, FACS analysis was performed on fibroblast cultures at passage 3. FACS analysis was performed using an LSR II flow cytometer (BD Biosciences) and analysed using FlowJo v.10.0.7. For FACS analysis, fibroblasts were stained with phycoerythrin-conjugated CD140a (BioLegend, 135905), in combination with the following allophycocyanin-conjugated antibodies: B220 (eBioscience, 47-0452-82), CD3 (BD Pharmingen, 557597), Gr-1 (eBioscience, 17-5931-82), F4/80 (eBioscience, 17-4801-82), Siglec H (BioLegend, 129611), CD11c (eBioscience, 17-0114-82) and propidium iodide staining solution (BD Pharmingen).
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6

Multicolor Immunophenotyping by Flow Cytometry

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Cells were stained with antibodies diluted in fluorescence-activated cell sorting (FACS) buffer (DMEM/0.1% sodium azide/1% FCS). Antibody specific for FcγII/IIIR (CD32/CD16) (eBiosciences: San Diego, CA, USA) was used at 5 μg/106 cells in 1 ml to block nonspecific antibody binding to cells. Fluorochrome or biotin-conjugated antibodies for CD11b, CD11c, MHC-II, F4/80, CD3, B220, CD150, CD48, Ly6G, CD45.2, CD29, CD51, CD54, CD31, gp38, CD105, Thy1.2, Sca-1, VCAM1, CD140a, Flt3, NK1.1, CD19, Gr-1, Ter119, and c-Kit, as well as streptavidin-PE-Cy7, streptavidin-PE, and streptavidin-FITC, were purchased from BioLegend (San Diego, CA, USA). Staining with 1 μg/ml propidium iodide (PI) (Sigma-Aldrich) was used to discriminate live cells. Isotype-matched control antibodies were used to set gates to assess specific antibody binding. Median fluorescence intensity (MFI) was calculated as the net change in median channel fluorescence for specific antibody above isotype control. Fluorescence minus one (FMO) controls were used to set gates for specific antibody binding in multicolour staining experiments. Flow cytometric analysis was carried out using BD FACSDiva (Becton Dickinson) and FlowJo software (Tree Star: Ashland, OR, USA).
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7

Flow Cytometry Analysis of Mouse Immune Cells

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Prepared single-cell suspensions from mouse tissues or ex vivo cultured cells were incubated with fluorescently labeled antibodies (1 : 200 in 2% FCS in PBS) directed against cell surface markers. Cell surface labeling was performed on ice for 30 min. All antibodies were purchased from Biolegend (molecule, fluorophore): CD45, Alexa Fluor 700; CD11b, BV650; Ly6c, BV570; Ly6G, Pacific Blue; CD326, APC/Fire™ 750; CD31, FITC; CD140a, Brilliant Violet 421. Cells were run on FACSymphony A5 cytometer (BD Biosciences) and data were analyzed by FlowJo (Tristar). Further information about the above antibodies, as well as other research design, is available in the Nature Research Reporting Summary linked to this article.
For cell sorting, a low-pressure sort was performed on the BD FACSAria II cell sorter with a 100 μm nozzle. Dead cells were stained with 4, 6-diamidino-2-phenylindole (DAPI) or propidium iodide (PI).
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8

Pancreatic Islet Isolation and Single-Cell Analysis

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Pancreatic islets were isolated as previously described [21 ]. Mice were euthanised by cervical dislocation. The pancreas was inflated with 3 ml cold collagenase (Sigma; St Louis, MO, USA) solution (0.3 mg/ml) through the bile duct with a 20G needle starting at the gall bladder. The pancreas was then removed into a siliconised glass tube containing 2 ml of 1 mg/ml collagenase solution and digested at 37°C in a water bath for 12–15 min. After three washes of the digested pancreas, islets were hand-picked and counted under a dissecting microscope for further experiments. For single-cell isolation, the islets were treated with Cell Dissociation Solution (Sigma) and the single-cell suspension was harvested. Beta cells from the dissociated islets were stained with fluorochrome-conjugated monoclonal antibodies to CD45 (BioLegend; San Diego, CA, USA), CD140a (BioLegend) and FluoZin-3-acetoxymethyl (AM) (CD45FluoZin-3-AM+; ThermoFisher, Waltham, ME, USA) [22 ] before being analysed by flow cytometry (LSRII; BD Bioscience, San Diego, CA, USA).
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9

Flow Cytometry and Western Blot Analysis of Cell Signaling Pathways

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The following antibodies were used in flow cytometry: phycoerythrin (PE)-conjugated anti-mouse CD44 (Biolegend, 103007), Sca-I (eBioscience, 12-5981-83), CD140a (Biolegend, 135906), CD13 (BD Pharmingen, 558745), MHC II (eBioscience, 12-5320-80), CD11b (eBioscience,12-0112-83), CD11c (eBioscience, 12-0114-82), CD86 (eBioscience, 12-0862-82), and CD45 (eBioscience, 12-0451-82). Antibodies used for western blotting analysis were: anti-p53 (FL-393; sc-6243, Santa Cruz Biotechnology); GAPDH (14C10, 2118, Cell Signaling Technology). Antibody used for Chip was: p53 (FL-393; sc-6243, Santa Cruz Biotechnology), IgG (normal mouse IgG, sc2025, Santa Cruz Biotechnology). The reagents for cell treatment were: Nutlin-3 (Nutlin-3, Selleck Chemicals, Houston, TX, USA), Cisplatin (Sigma-Aldrich), RANKL (recombinant mouse RANKL, 50 ng/ml, R&D), M-CSF (recombinant mouse M-CSF, 25 ng/ml, R&D), and OPG (recombinant OPG, 50 ng/ml, Sigma-Aldrich). RANKL for mouse injection (recombinant mouse RANKL, 2 mg/kg/day) was from R&D Systems.
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10

Flow Cytometry Analysis of Mouse Immune Cells

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Prepared single-cell suspensions from mouse tissues or ex vivo cultured cells were incubated with fluorescently labeled antibodies (1 : 200 in 2% FCS in PBS) directed against cell surface markers. Cell surface labeling was performed on ice for 30 min. All antibodies were purchased from Biolegend (molecule, fluorophore): CD45, Alexa Fluor 700; CD11b, BV650; Ly6c, BV570; Ly6G, Pacific Blue; CD326, APC/Fire™ 750; CD31, FITC; CD140a, Brilliant Violet 421. Cells were run on FACSymphony A5 cytometer (BD Biosciences) and data were analyzed by FlowJo (Tristar). Further information about the above antibodies, as well as other research design, is available in the Nature Research Reporting Summary linked to this article.
For cell sorting, a low-pressure sort was performed on the BD FACSAria II cell sorter with a 100 μm nozzle. Dead cells were stained with 4, 6-diamidino-2-phenylindole (DAPI) or propidium iodide (PI).
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