In order to detect the presence and origin of
gimB in
E.
coli from different animal species, PCR was performed on DNA isolated
from clinical samples of swine, cattle, dogs and cats stored in the LABAC’s
collection, UFSM/RS (
Table 1). These samples
were taken between 1990 and 2012 and the isolates were preserved by lyophilization.
The lyophilized samples were plated on 5%
sheep-blood agar (Himedia, Mumbai, Índia)
and
MacConkey agar (Himedia, Mumbai, Índia). Colonies were confirmed as
E.
coli by Gram staining and biochemical characterization (Quinn
et al., 1994 ). Subsequently, DNA was
extracted from the confirmed colonies (
Cheng and
Jiang, 2006) and was used as a template for PCR assay with primers 6F and
6R (6F: 5′-GCGGGTGCCGATTATATTTC-3′ and 6R: 5′-CTTCGCGCTGCTATTGAA-3′) according to the
conditions described by
Matter et
al. (2011). The 6F and 6R primers were designed with the
gimB sequence available (access number AY170898.1) using the
Primer3Plus program. PCR reaction resulted in an amplicon of 724 bp. In order to
verify the DNA quality for PCR, species-specific PCR for the detection of
E.
coli was performed as well using the primer pair ECA75F
(5′-GGAAGAAGCTTGCTT CTTTGCTGAC-3′) and ECR619R (5′-AGCCCGGGGAT TTCACATCTGACTTA-3′)
(SABAT
et al., 2000). The MT 78 strain was used as a positive
control in all assays (
Matter et
al., 2011).
Matter L.B., Spricigo D.A., Tasca C, & de Vargas A.C. (2015). Invasin gimB found in a bovine intestinal Escherichia coli with an adherent and invasive profile. Brazilian Journal of Microbiology, 46(3), 875-878.