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22 protocols using pgex 4t vector

1

Constructing GST-Fused Protein Expression Plasmids

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The expression plasmids of glutathione-S-transferase (GST)-fused proteins were constructed by recombining the cDNA sequences into pGEX-4T vectors (GE Healthcare Life Sciences, Pittsburgh, PA), as previously described [18 –20 , 34 (link)]. The pBluescript plasmids containing cDNA inserts were digested with EcoRI and XhoI and separated via agarose gel electrophoresis. Inserted cDNA fragments were isolated using GenEluteTM Minus EtBr Spin Columns (Merck, Darmstadt, Germany) and were ligated in frame to pGEX-4T using a Ligation-Convenience Kit (Nippon Gene, Toyama, Japan). Ligation mixtures were used to transform ECOSTM-competent E. coli BL-21 (Nippon Gene).
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2

Constructing GST Fusion Protein Plasmids

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Expression plasmids of GST fusion proteins were constructed by recombining the cDNA sequences into pGEX-4T vectors (GE Healthcare Life Sciences, Pittsburgh, PA) as previously described [16 , 17 (link), 23 (link)-26 (link), 28 (link)-32 (link), 34 , 39 (link), 42 , 43 (link)]. The pBluescript plasmids containing cDNA inserts were digested with EcoRI and XhoI and separated via agarose gel electrophoresis. The inserted cDNA fragments were isolated using GenElute Minus EtBr Spin Columns (Sigma-Aldrich, St. Louis, MO). Using Ligation Convenience Kits (Nippon Gene, Toyama, Japan), the inserts were properly ligated in frame to EcoRI- and XhoI-digested pGEX-4T-1 or pGEX-4T-3 linearized vectors, which express the recombinant GST-tagged proteins. The ligation mixtures were used to transform ECOS competent E. coli BL-21 cells (Nippon Gene), and appropriate recombinants were confirmed by DNA sequence analysis as well as protein expression. To confirm successful recombination, expression of GST fusion proteins was induced by treating the transformed bacterial clones with 0.1 mM IPTG for 2.5 h, and expressed proteins were electrophoresed through 11% sodium dodecyl sulfate (SDS)-polyacrylamide gels.
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3

Constructing GST-fused Protein Plasmids

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We constructed expression plasmids of glutathione-S-transferase (GST)-fused proteins by recombining the cDNA sequences into pGEX-4T vectors (GE Healthcare Life Sciences, Pittsburgh, PA), as previously described [6, 17, (link)21, (link)33, 34] (link). EcoRI and XhoI digestion was performed on the pBluescript plasmids containing cDNA inserts. Digestion products were then separated via agarose gel electrophoresis.
Inserted cDNA fragments were isolated using GenElute™ Minus EtBr Spin Columns (Merck, Darmstadt, Germany). Subsequently, ligation was performed in frame to EcoRI-and XhoI-digested pGEX-4T-2 linearized vectors using a Ligation-Convenience Kit (Nippon Gene, Toyama, Japan). Ligation mixtures were then used to transform ECOS TM -competent E. coli BL-21 (Nippon Gene).
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4

Generation and characterization of CEP120 constructs

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The GFP- or myc-tagged cDNA constructs for CEP120, including those encoding the full-length protein and various CEP120 fragments were as described in our previous paper17 (link). The GST-fusion constructs were generated by inserting cDNAs encoding various potions of CEP120 in-frame with GST in the pGEX4T vector (GE Healthcare) or were as previously described17 (link). The QuikChange site-directed mutagenesis kit (Stratagene) was used to make the disease-associated CEP120 mutant constructs. The constructs that express various GFP-CEP120 mutant proteins were generated using pLVX-Tight-puro vectors (BD Biosciences Clontech). The human C2CD3 cDNA fragment, which was a gift from Dr. Gonczy’s lab54 (link), was subcloned into the pEGFP-C1 vector (BD Biosciences Clontech). The cDNAs encoding full-length Talpid3 or C2CD3 were obtained by RT-PCR from the total RNA of human HEK293T cells, and subcloned in-frame into the pEGFP-C1 vector (BD Biosciences Clontech). The sequences of all constructed plasmids were confirmed.
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5

Construction of GST-Fused Protein Plasmids

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To construct the glutathione-S-transferase (GST)-fused protein expression plasmids, the cDNA sequences were recombined into the pGEX-4T vector (GE Healthcare Life Sciences, Pittsburgh, PA, USA) as previously described (32 (link), 35 (link), 37 (link)). The pBluescript plasmids associated with the cDNA inserts were digested with the restriction endonucleases EcoRI and XhoI and detached by agarose gel electrophoresis. GenElute Minus EtBr spin columns (Sigma-Aldrich Corp., St. Louis, MO, USA) were used to isolate the cDNA fragments which were ligated in frame to EcoRI- and XhoI-digested pGEX-4T-3 linearized vectors with ligation convenience kits (Nippon Gene, Toyama, Japan). The ligation mixtures were used to transform ECOS-competent E. coli BL-21 cells (Nippon Gene). Successful recombination was confirmed by DNA sequencing and protein expression analysis.
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6

Purification and Interaction of AceGBF3 and AceMYBS1

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The full‐length CDS of AceGBF3 was cloned into pGEX‐4T vector (GE Healthcare, Chicago, IL, USA) in which it is fused to glutathione‐S‐transferase (GST) sequence. The recombinant vectors were introduced into BL21 cells to produce AceGBF3‐GST fusion protein, and expressed AceGBF3‐GST and AceMYBS1‐6xHis fusion protein was purified as described previously (Xu, 2020 ). Aliquots (20 μl) of AceGBF3‐GST and AceMYBS1‐His proteins were mixed with 1 ml binding buffer (50 mM Tris–HCl (pH = 7.5), 100 mM NaCl, 0.25% Triton‐X100 (v/v), 35 mM β‐Mercaptoethanol), then 50 μl Proteinlso GST Resin or 50 μl Proteinlso Ni‐NAT Resin (TransGen) was added and the mixture was rotated at 4°C for 3–4 h. The samples were washed four times with binding buffer, with expressed GST or 6xHis used as negative controls. 6xSDS protein loading buffer was added to samples (to 1× final) and samples were denatured by boiling for 10 min before electrophoresis. After electrophoresis the gels analyzed by Western blot using anti‐HiS (1 : 10 000 (v/v), Proteintech, 66005‐1‐lg) and anti‐GST (1 : 10 000 (v/v), Proteintech, 66002‐2‐lg; both sourced from Wuhan Sanying, Wuhan, China) antibodies.
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7

Reagents and Materials Acquisition for Research

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Chemical reagents and materials. Chemicals and antibiotics were purchased from Sigma (Oakville, Canada) or Thermo-Fisher (Whitby, Canada), unless otherwise stated. Chromatography media and columns were purchased from GE Healthcare (Quebec, Canada). Growth media were purchased from Fisher.
Escherichia coli strains, NovaBlue and BL21(DE3), and cloning and expression plasmids were purchased from EMD4 Biosciences (New Jersey, USA). The pGEX-4T vector was purchased from GE Healthcare (Quebec, Canada). Restriction enzymes were obtained from New England Biolabs Canada (Pickering, Canada) or Thermo-Fisher. The [γ-
32P] ATP was purchased from Perkin Elmer LAS Canada Inc. (Toronto, Canada) or GE Healthcare. The Proteo Extract All-in-One Trypsin Digestion Kit was purchased from EMD4 Bioscience. The genomes of
S. aureus strain Mu50 and
Bacillus subtilis strain 168 were obtained from Cedarlane (Burlington, Canada). Oligonucleotides were acquired from Sigma (Canada).
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8

Functional Characterization of Got1l1 Protein

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The mouse and human Got1l1 cDNAs were amplified by PCR and cloned into the pGEX-4T vector (GE Healthcare). The resultant plasmids named pGEX-Got1l1 and pGEX-hGot1l1 expressed Got1l1 with N-terminally glutathione S-transferase (GST)-tagged fusion proteins. The E. coli BL21 cells (Novagen, Madison, WI, USA) transformed with each plasmid were cultivated in an LB medium containing 100 μg/ml ampicillin at 22 °C. The protein was expressed by adding 0.1 mM isopropyl β-d-thiogalactopyranoside (IPTG) at the mid-log phase. The GST fusion protein was purified by affinity chromatography with glutathione Sepharose 4B resin (GE Healthcare) in accordance with the manufacturer’s instruction.
The d-glutamate auxotrophy assay was performed as described previously (Doublet et al. 1992 (link)). We used E. coli WM335 cells harboring the empty vector (pGEX-4T), pGEX-Got1l1, pGEX-hGot1l1, or pICT113 expressing d-amino acid aminotransferase. These E. coli. WM335 cell strains were cultivated with or without 0.1 % d-glutamate on LB agarose plates containing ampicillin and 0.1 mM IPTG. The plates were incubated at 22 °C for 3 days and photographed.
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9

Purification of Syt-1, Syt-7 C2AB Domains

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C2AB modules from Syt-1 and Syt-7 chimeras (amino acids 96–421) were subcloned into a pGEX4T vector (GE), expressed as GST-­fusion proteins, purified from Escherichia coli lysates via GST-sepharose affinity chromatography, and thrombin cleaved in 100 mM KCl, 25 mM HEPES, pH 7.4, 5% glycerol. Syt7 C2AB (amino acids 134–403) was expressed with a His6 tag (pTrcHis vector, Invitrogen), purified from E. coli lysates via Ni-NTA-sepharose affinity chromatography, eluted with 500 mM imidazole, and dialyzed overnight against 100 mM KCl, 25 mM HEPES, pH 7.4, 5% glycerol. Protein concentrations were determined by SDS–PAGE using BSA standards.
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10

Recombinant Expression and Purification of p53 and MED25 Proteins

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The human p53TAD (residues 1–73) and human MED25 ACID (residues 394–543) were cloned into the pGEX-4T vector (GE-healthcare, Chicago, IL, USA) containing an N-terminal glutathione-S-transferase (GST) tag and pET-21b vector (Novagen, Madison, WI, USA) containing a C-terminal His6 tag, respectively. The p53TAD1 (residues 15–29) and the wild-type and mutant p53TAD2 (residues 39–57) peptides were chemically synthesized and purified by Peptron Inc. (Daejeon, Korea).
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