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7 protocols using dapi blue

1

Immunofluorescence and Autophagy Assay

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Cells grown on coverslips were fixed with 4% paraformaldehyde for 20 min at 4 °C. After washing three times, cells were blocked with 1% BSA at room temperature and incubated with primary rabbit anti-occludin antibody and secondary FITC-conjugated goat anti-rabbit antibody (Invitrogen, USA), respectively. For the analysis of LC3B expression, cells grown on coverslips to 60–70% confluence were transfected with the pLVX-mRFP-EGFP-LC3B plasmid (provided by Prof. Qian Yang, Nanjing Agriculture University, Nanjing, China) using jetPRIME transfection reagent (Polyplus-transfection, Illkirch, France) according to the manufacturer’s protocols. Nuclei were stained with DAPI (Blue, Beyotime Biotechnology, China). Fluorescence microscopy was performed using a Zeiss LSM710 confocal microscope (Zeiss, Oberkochen, Germany).
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Visualizing Autophagy in Cancer Cells

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Kyse30 and Kyse450 cells were plated on a glass‐bottom cell culture dish and treated with 0.1% DMSO or PR‐619 (8 µmol/L) for 24 hours. Cells were fixed with methanol at −20°C for 30 minutes, blocked by 5% BSA and then incubated with LC3 primary antibody (1:200, overnight at 4℃) (Cell Signaling Technology, Inc, Boston, MA) and Alexa Fluor® 488 Goat Anti‐Rabbit IgG (H + L) secondary antibody (green) (1:500, 2 hours at room temperature) (Beyotime, China), respectively. The nuclei were stained by DAPI (blue) (5 μg/mL, 20 minutes at room temperature) (Beyotime, China). Images were captured using fluorescence microscopy (magnification: 200×; Nikon, Nikon Inc, Tokyo, Japan).
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3

Amentoflavone Inhibits HSV-1 Infection

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Vero cells or SK-N-SH cells infected with HSV-1 in the presence of amentoflavone (50 μM) were washed with phosphate-buffered saline (PBS) for three times, fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.1% Triton X-100 for 5 min, and blocked with 5% bovine serum albumin for 1 h. Subsequently, the samples were incubated with anti-gD or anti-VP5 antibodies overnight at 4 °C. Next, the samples were incubated with Alexa Fluor 488 (green)-labelled secondary antibody (life technologies) for 1 h. In addition, cell nucleus was stained with DAPI (blue) (C1006, Beyotime, ShangHai, China) and cell actin filaments were stained by FITC-labelled phalloidin (red). Finally, fluorescent images were obtained using a confocal laser scan microscope (LSM 510 meta; Zeiss, Jena, Germany).
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4

Exosomal miR-148a-3p Uptake and Analysis

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Cy5-labelled hsa-mir-148a-3p mimic and mimic control were purchased from RiboBio (Guangzhou, China). Briefly, Exosomes extracted by the ExoQuick-TC were resuspended in 300μL PBS and transfected with miRNA mimics using Exo-Fect siRNA/miRNA Transfection Kit (System Biosciences, Palo Alto, CA) according to the manufacturer's protocol.
For exosome-uptaking assay, transfected exosomes were labelled with PKH67 (Sigma-Aldric, St. Louis, MO, USA) away from light at room temperature for 4min. After incubation with pre-treated exosomes for 24h, tumor cells were stained with phalloidin-rhodamine (Red, Sigma-Aldric) and DAPI (Blue, Beyotime). Images of tumor cells were captured using a laser confocal microscope (Leica, Germany) and qRT-PCR was performed to validate the miRNA expression level.
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Autophagy Induction Assay in Cancer Cells

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HCCLM3 and SMMC-7721 cells were placed in a glass-bottom cell culture dish and treated with 0.1% DMSO or ML-323 (80 μmol/L) for 24 h. The cells were fixed with anhydrous methanol at −20 °C for 25–30 min, blocked with 5% bovine serum albumin, and then with LC3B primary antibody (1:300, overnight at 4 °C; Cell Signaling Technology) and AlexaFluor488® goat anti-rabbit IgG (H+L) secondary antibody (green) (1:500, 2 h at 25 °C in the dark; Beyotime) were incubated separately. The nuclei were stained with DAPI blue (5 μg/ml, 20 min at 25 °C, in the dark; Beyotime). A fluorescence microscope (magnification:200×; OLYMPUS, OLYMPUS Corporation, Japan) was used.
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6

Immunofluorescence Staining of Endothelial Cells

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Cells were fixed with 4% paraformaldehyde, permeabilized with 0.2% triton X-100 (Beyotime, Shanghai, China). After blocking with FBS, cells were incubated with primary antibodies CD31 (1:100, ABclonal; A0378), vWF (1:100, ABclonal; A1335) and DAPI (blue) (Beyotime) and Alexa Fluor594 (red) (1:200, Beyotime) conjugated second antibodies. Images were acquired using fluorescence microscopy (Nikon, Tokyo, Japan).
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7

Targeting Lung Inflammation with Nanotherapeutics

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The lipopolysaccharide (LPS) was isolated from the outer membrane of Gram-negative bacteria to induce acute lung injury models (Wang et al., 2014 (link), 2020 (link)). LPS (5 mg/kg) solution was dropped into mice via intratracheal instillation. After 5 h, the mice were randomly divided into 3 groups and treated with free DiR and different DiR-labeled formulations via tail vein injection. At 24 h, the main organs were isolated for imaging using an IVIS in vivo system (IVIS® Spectrum, PerkinElmer, USA) at 750/800 nm. Living Image® software (Caliper, Alameda, CA) was used to quantify the fluorescence signals.
The specific targeting of MM-NLCs to lung inflammation sites was evaluated under CLSM. DiI-labeled NLCs and MM-NLCs were injected into mice via the tail vein. At 12 h, lung tissues from each group were removed, frozen in OCT, and sectioned at 10 μm (RM2016, Leica, Germany). Meanwhile, samples were stained with DAPI (blue, Beyotime) for visualization. The red signals of nanotherapeutics and blue signals of nuclei were recorded to assess the targeting capacity of MM-NLCs to lung inflammation sites in the acute lung injury mouse model.
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