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5 protocols using anti β actin hrp

1

Caspase-1 Activity Assay in Macrophages

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The Caspase-Glo 1 assay (Promega) was used to measure the activity of caspase-1 in J774.1 macrophages either infected with M. tuberculosis at an MOI of 5 or treated with nigericin, an NLRP3 inflammasome inducer, at a final concentration of 20 μM. After 4–6 hours of infection or nigericin treatment, unprocessed cell samples were mixed at a 1:1 volume ratio with assay reagent in 96-well opaque plates, and the activity of caspase-1 in each sample was measured according to the manufacturer’s protocol. In brief, after 90 minutes of incubation at room temperature, luminescence produced by caspase cleavage of the Z-WEHD substrate was read on a standard plate reader. A caspase-1–specific inhibitor (Ac-YVAD-CHO) was added to parallel samples to confirm specific activity, and wells without cells were run to control for background signal. The values from both the Ac-YVAD-CHO and blank control were subtracted from the Z-WEHD substrate sample value, representing caspase-1 activity.
Immunoblots of cell lysates were probed with the following antibodies: anti-MDA5 (Cell Signaling Technology 3743), anti-LC3 (Cell Signaling Technology 12741), anti–caspase-1 (eBioscience 5B10), or anti–β-actin–HRP (Abcam 49900).
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2

Caspase-1 Activity Assay in Macrophages

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The Caspase-Glo 1 assay (Promega) was used to measure the activity of caspase-1 in J774.1 macrophages either infected with M. tuberculosis at an MOI of 5 or treated with nigericin, an NLRP3 inflammasome inducer, at a final concentration of 20 μM. After 4–6 hours of infection or nigericin treatment, unprocessed cell samples were mixed at a 1:1 volume ratio with assay reagent in 96-well opaque plates, and the activity of caspase-1 in each sample was measured according to the manufacturer’s protocol. In brief, after 90 minutes of incubation at room temperature, luminescence produced by caspase cleavage of the Z-WEHD substrate was read on a standard plate reader. A caspase-1–specific inhibitor (Ac-YVAD-CHO) was added to parallel samples to confirm specific activity, and wells without cells were run to control for background signal. The values from both the Ac-YVAD-CHO and blank control were subtracted from the Z-WEHD substrate sample value, representing caspase-1 activity.
Immunoblots of cell lysates were probed with the following antibodies: anti-MDA5 (Cell Signaling Technology 3743), anti-LC3 (Cell Signaling Technology 12741), anti–caspase-1 (eBioscience 5B10), or anti–β-actin–HRP (Abcam 49900).
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3

Antibody-based Detection of Protein Interactions

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The following primary antibodies were used for co-immunoprecipitation and Western blot experiments: anti-Flag-HRP (sc-166355, Santa Cruz Biotechnology) anti-Flag (F1804, Sigma-Aldrich), mouse anti-RIPK3 (sc-374639, Santa Cruz Biotechnology), anti-β-actin-HRP (ab20272, Abcam), anti-V5 tag (ab27671, Abcam), anti-V5-HRP (R961-25, Invitrogen), anti-GAPDH-HRP (MA515738) anti-DENV NS3 (GTX124252, GeneTex), anti-DENV NS4B (GTX103349, GeneTex), anti-DENV NS1 (GTX103346, GeneTex), anti-DENV NS2B (GTX124246, GeneTex) anti-RIPK1 (D94C12, Cell Signaling Technology), anti-LC3B (2775S, Cell Signaling Technology), anti-p-MLKL (91689S, Cell Signaling Technology). Secondary antibodies used were goat anti-rabbit-HRP (32260, Thermo Scientific) and anti-mouse-HRP (sc516102, Santa Cruz Biotechnology). The following reagents were used for inhibitor treatment experiments: NH4Cl (A9434, Sigma-Aldrich), Chloroquine (C6628, Sigma-Aldrich), MG132 (NC9038428, Fisher Scientific), z-VAD-FMK (SC-3067, Santa Cruz Biotechnology) and DMSO (BP231-100, Fisher Scientific).
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4

Protein Interactions in Germ Cells

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HEK293, K562 and M0E7 cells and P9 or 3 month-old mouse testes were homogenized in 1X RIPA buffer (Millipore) supplemented with protease inhibitors (complete mini, Roche) with rotation at 4°C for 30 min. Cell lysates were centrifuged at 15,000 g for 20 min at 4°C. Cell debris were discarded, protein amount quantified and co-immunoprecipitations were performed overnight at 4°C using anti-c-Kit (Santa Cruz) or anti-HA antibodies (Abcam) and specific Ig isotypes as negative controls. Pre-blocked protein G beads were used to pull-down the protein complexes (Trueblot).
WGA pull-down experiments were performed as previously reported [47 (link)]. Antibodies were: goat anti-c-Kit (Santa Cruz; R&D) for mouse experiments; anti-c-Kit mouse monoclonal antibody (E-3) against the c-terminus of human c-kit (Santa Cruz) for the human line experiments, Phospho-c-kit (Tyr703; Cell Signaling), rabbit anti-RanBPM (Abcam), anti-HA-Peroxidase high affinity (Roche), anti-pAkt, anti-pErk (Cell signaling), anti-β-actin-HRP, anti-MVH (Abcam), anti-GAPDH mouse monoclonal against rabbit muscle GAPDH (Millipore, MAB374).
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5

Protein Extraction and Western Blot Analysis of Alzheimer's Markers

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Hippocampi were harvested and homogenized in RIPA buffer (25 mM Tris-HCl, 150 mM NaCl, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% SDS, protease inhibitor, pH 7.5) to extract total protein. Total protein concentration was determined by using Bradford assay (Carl Roth). Samples were separated by 4–12% NuPAGE Bis-tris mini gels (Invitrogen) and immunoblotted using antibodies against APP and CTFs (1:3000, Sigma), BACE1, ADAM10 (1:1000, Cell Signaling Technology), Nicastrin, PEN2, Presenilin 1 and 2 (PS1, PS2) (1:1000, γ Secretase Antibody Sampler Kit, Cell Signaling Technology) and anti-Aβ (6E10, 1:3000, Biolegend) for 24 h at 4 °C. Anti-β-actin-HRP (1:5000, Abcam) was used as loading control. Immunoblots were incubated with corresponding HRP-linked secondary antibodies for 1 h at RT and visualized by using SuperSignal™ West Femto Maximum Sensitivity Substrate (Thermo Fisher).
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