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Image studio software version 3.1.4

Manufactured by LI COR

Image Studio software (version 3.1.4) is a data analysis and image processing software for use with LI-COR's imaging systems. It provides tools for quantifying and analyzing image data.

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2 protocols using image studio software version 3.1.4

1

Quantitative Detection of Collagen I and p-SMAD1/5/8 in Osteogenic Cells

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For detection of COLI and phosphorylation of SMAD 1/5/8 (Ser 463/Ser 465) (p-SMAD1/5/8) cells were fixed with 70% ethanol after 24 h and 4 days of culture in osteogenic medium. After being rinsed with PBS, the cells were incubated with 10% bovine serum albumin for 60 min at room temperature before being incubated overnight with COLI (sc-8784-R, Santa Cruz Biotechnology, Inc.) or p-SMAD1/5/8 (sc-12353-R, Santa Cruz Biotechnology, Inc.), dilution 1:100, 4°C. After being rinsed with PBS, the cells were incubated for 60 min with a biotinylated antibody (E0432, DAKO), dilution 1:300. They were again rinsed with PBS, then incubated 120 min with streptavidin and Alexa Fluor® 700 conjugate (S-21383, Life Technologies) for detection of COLI or streptavidin and Alexa Fluor® 488 conjugate (S-11223, Life Technologies) for detection of p-SMAD1/5/8, dilutions 1:500. After being rinsed with PBS, the cells were dried overnight at 4°C. Quantitative detection of COLI was then performed using Odyssey® Sa Infrared Imaging (Licor Biosciences) and Image Studio software (version 3.1.4) (Licor Biosciences). Cells for p-SMAD1/5/8 evaluation were mounted in glycergel mounting medium and visualized by fluorescence microscopy.
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2

Western Blot Analysis of Nuclear and Cytoplasmic Proteins

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Astrocytes were treated as indicated, and total extracts (30µg of protein), or the nuclear and cytoplasmic subcellular fractionations of cells, were separated by NuPAGE 10% Bis-Tris Gel (Invitrogen), and electroblotted onto supported nitrocellulose membrane. Subcellular fractionations were prepared using the NE-PER® Nuclear and Cytoplasmic Extraction kit (Pierce Biotechnology), according the manufacture instruction. Blot were probed with Rabbit anti-IRF-1 (D5E4) XP® Rabbit mAb, GAPDH (D16H11) XP® Rabbit mAb, Lamin B1 polyclonal Rabbit Abs, NF-κB p65 (D14E12) XP® Rabbit mAb, followed by goat anti-rabbit IgG peroxidase conjugate Abs (all antibodies from Cell signaling). The blots were developed using the SuperSignal West Pico chemiluminescence kit (Pierce Biotechnology). Each blot was reprobed with GAPDH (total extract, or cytoplasmic fractionation) or Lamin B1 (nuclear fractionation) to verify protein uniformity. Data quantification was done using Image Studio software (Version 3.1.4) (LI-COR, Inc.)
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