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Nuclepore polycarbonate filters

Manufactured by Cytiva
Sourced in United Kingdom

Nuclepore polycarbonate filters are a type of laboratory filtration membrane. They are made from polycarbonate material and feature precisely engineered, uniform pore sizes to enable efficient separation and filtration of various samples and solutions.

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6 protocols using nuclepore polycarbonate filters

1

Skin Barrier Model Preparation

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The skin barrier models were prepared as equimolar mixtures of Cer or its unnatural analogs, Chol, and LIG with the addition of 5 wt% of CholS9 (link),46 (link). First, the lipids were dissolved in 2:1 hexane/96% EtOH (or 96% EtOH for CholS) with sonication and mixed to yield the desired composition. The lipid solutions were evaporated under a stream of nitrogen, dried under vacuum, and then redissolved in 2:1 hexane/96% ethanol (v/v) at 4.5 mg/mL. These lipid solutions (3 × 100 µL per cm2) were slowly sprayed on Nuclepore polycarbonate filters with 15 nm pores (Whatman, Kent, UK) or on 22 mm × 22 mm supporting glass cover slides under a stream of nitrogen using a Linomat V (Camag, Muttenz, Switzerland) equipped with additional y-axis movement. This fast drying suppressed artefactual lipid unmixing during solvent evaporation. The supporting filters did not significantly contribute to membrane barrier properties8 (link). The lipid films were heated to 90 °C, a temperature that is above the main lipid phase transitions in our samples, equilibrated for 10 min, and then slowly (~3 h) cooled to room temperature. All samples were equilibrated at 32 °C for at least 3 days before the experiments.
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2

Artificial Skin Lipid Membranes

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FFA were mixed in a molar % that corresponds to the composition of human skin FFA36 (link) (see Supplementary information). Then the FFA mixture was combined with equimolar amounts of Chol and sphingolipids (CerNS, hCer or GlcCer, for details, see Fig. 1 and Supplementary information) and 5 wt% of CholS. The lipid mixtures were dissolved in hexane/96% ethanol 2:1 (v/v) at concentration 4.5 mg/ml. Mixtures containing hCer created fine suspensions, which were homogenized by ultrasound. Then, the lipid solutions/suspensions (3 × 100 µl; 1.35 mg/cm2) were sprayed to Nuclepore polycarbonate filters with 15 nm porosity (Whatman, Kent, UK) under nitrogen using a Linomat V (Camag, Muttenz, Switzerland) equipped with additional y-axis movement36 (link). Thus, each membrane (0.79 cm2) contained 1 mg of lipids. The prepared lipid membranes were dried in vacuum over P4O10 and solid paraffin and stored at −20 °C. The day before the permeation experiments, the lipid membranes were annealed at 90 °C for 10 min and then slowly (3–4 h) cooled to 32 °C. During this process, a lamellar structure was created. Afterward, the membranes were equilibrated at 32 °C and 45 ± 5% relative humidity for at least 24 h. The lipid films for FTIR experiments were prepared in the same manner. The homogeneity of the membranes was previously validated37 .
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3

Characterization of Ceramide Lipids

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Esterified omega-hydroxyacyl-sphingosine (CER EOS), as well as shorter CERs including: N-(tetracosanoyl)-sphingosine (CER NS), N-(tetracosanoyl)-phytosphingosine (CER NP); N-(2R-hydroxy-tetracosanoyl)-sphingosine (CER AS), and N-(2R-hydroxy-tetracosanoyl)-phytosphingosine (CER AP), were all kindly donated by Evonik, Essen, Germany. CER nomenclature was used based on the definitions from Motta et al. [22 (link)]. The sphingoid chain length for all the CERs was C18, while the acyl chain was C24, except for CER EOS with C30 chain, and an additional shorter CER NP with C16 acyl chain. Palmitic acid (C16), stearic acid (C18), arachidic acid (C20), behenic acid (C22), tricosylic acid (C23), lignoceric acid (C24), cerotic acid (C26), octacosanoic acid (C28), and cholesterol (CHOL) were purchased from Sigma-Aldrich Chemie GmbH, Schnelldorf, Germany. The deuterated FFA C16 and C24, which were deuterated along the entire acyl chain (C16-d31 and C24-d47), were obtained from Larodan (Malmö, Sweden) and Arc Laboratories B.V. (Apeldoorn, The Netherlands), respectively. All solvents used were of analytical grade and supplied by Labscan, Dublin, Ireland. The water was of Millipore quality produced by a Milli-Q water filtration system with a resistivity of 18 MΩ cm at 25 °C. Nuclepore polycarbonate filters, with 0.05 μm pore size were purchased from Whatman, (Kent, UK).
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4

Chemo-invasion and Motility Assays

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Nuclepore polycarbonate filters (13 mm, 8 μm pore size, polyvinylpyrrolidone [PVP]-free; Whatman International Ltd., Maidstone, UK) were coated with basement membrane components extract (Matrigel, 25 μg per filter) for the chemo-invasion assay or with 5 μg collagen IV for the motility assay, and placed in Boyden chambers. OVCAR-8 cells (n = 200,000) were resuspended in a serum-free medium and placed in the upper compartment of the Boyden chambers. A chemoattractant, fibroblast-conditioned medium (obtained from NIH-3T3 cells) was used. After 5 or 24 h of incubation at 37 °C in a 5% CO2 incubator, the filters’ lower surface was stained in DiffQuik (Medion Diagnostics International Inc., Miami, FL, USA) and five random fields were counted.
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5

Microbial Community Structure Analysis

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Prokaryotic and eukaryotic community composition were determined from ~2 L water samples, which were sequentially filtered through 3-μm-pore-size Nuclepore polycarbonate filters (Whatman) and 0.22-μm-pore-size Sterivex filters (EMD Millipore) and analyzed as described in [31 ] and Supplementary Material. In brief, for prokaryotes, the 16S rRNA gene V4-V5 region was amplified using the universal primers “515 F” and “926 R” [39 (link)] from the <3.0-µm and >0.2-µm size fraction. Eukaryotic 18S rRNA genes were amplified using the primers TAReuk454FWD1 and TAReukREV3 [40 (link)] from both size fractions. Amplicons were sequenced on a MiSeq platform (Illumina, Inc.) to obtain 2 × 300 bp paired-end reads. Raw reads were processed using the Ampliseq (v2.2.0) pipeline [41 (link)] and SILVA reference database (v138.1) [42 (link)] for taxonomic assignments of 16S rRNA gene amplicon sequence variants (ASVs). The databases PR2 together with the marine protist database from the BioMArKs project were used to infer taxonomy of 18S rRNA gene ASVs.
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6

Seawater Sampling and DNA Extraction

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Seawater samples were collected at multiple depths at the long-term stations and at the surface and DCM depths at the short-term stations using a CTD-rosette system equipped with 21 L × 12 L Niskin bottles. The water samples were successively filtered through 0.8 μm pore-size filters and then onto 0.2 μm pore-size Sterivex cartridges (Millipore, Billerica, NY, USA) or onto 47 mm, 0.2 μm pore-size Nuclepore polycarbonate filters (Whatman, Maidstone, UK) except for stations MAR and STB13 (successive filtration through 3.0 μm pore-size filters and then onto 0.2 μm Sterivex). Filtered volumes were noted and ranged between 4.5 and 8.1 L for the Sterivex collections and between 0.75 and 1.0 L for the polycarbonate filter collections. The filters and Sterivex cartridges were immediately stored in liquid nitrogen then at –80°C until nucleic acid extraction. DNA extractions were carried out on Sterivex cartridges from all stations except for HNL, STB8, STB11, and STB19 where only polycarbonate filters were available.
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