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Ix51 microscope

Manufactured by Olympus
Sourced in Japan, United States, Germany

The IX51 microscope is a high-performance inverted microscope designed for a variety of laboratory applications. It features advanced optical components and a sturdy, ergonomic design to provide clear, high-quality images. The IX51 is suitable for a range of microscopy techniques, including brightfield, phase contrast, and fluorescence imaging.

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297 protocols using ix51 microscope

1

Quantitative Analysis of Osteoclast Fusion

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Osteoclasts cultured on TCPS and ECM were fixed with 4% paraformaldehyde for 15 min at room temperature. F-actin rings were stained with CytoPainter Phalloidin-iFluor 488 Reagent (Abcam) for 1 h according to the manufacturer’s instructions. Cell nuclei were counterstained with DAPI. Immunofluorescence images of F-actin rings were captured by an Olympus IX51 microscope. Using the ImageJ software (National Institutes of Health, Bethesda, MD, USA), at least 20 multinucleated osteoclasts in 10 randomly chosen fields were analyzed for the areas of F-actin rings. The number of nuclei within F-actin rings and total nuclei in all cells was quantified. The percent nuclei in F-actin was expressed as an index for fusion efficiency, which was calculated as nuclei within F-actin rings divided by total nuclei [25 (link)].
To investigate the role of NF-κB in osteoclastogenesis, osteoclasts were first fixed in ice-cold methanol for 15 min and then permeabilized for 5 min in 0.1% Triton X-100. The cells were blocked for 30 min with 1% BSA and incubated in appropriately diluted primary antibodies against p65 for 1 h. After a brief washing with PBS, an Alexa Fluor® 488 donkey anti-mouse IgG secondary antibody (Thermo Fisher Scientific) was used. Cell nuclei were stained with DAPI for 5 min. Fluorescence images were obtained using an Olympus IX51 microscope.
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2

Wound Healing and Invasion Assays

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GL15, U87MG and U251 cells were seeded into six well plates and grown to confluence. The surface was scratched as uniformly as possible with a pipette tip to generate a wound. Detached cells were removed through a gentle wash with DMEM and the culture medium was replaced with serum-free DMEM plus 2.5 μM PP242, 500 nM wortmannin or 1 μM rapamycin. The wound area were photographed once a day till the wound area of control cells was completely closed using an Olympus IX51 microscope with 4× magnification for GL15 cells and 10× magnification for U87MG and U251 cells. The size of the wound area was calculated at each time point using the open source software Image J (MRI_wound_healing_tool-6). For invasion assay GL15, U87MG and U251 cells were harvested with serum-free DMEM and 200 μl of cell suspension (5 × 104 cells) were seeded into the upper chamber (Falcon®), whereas the lower chamber was filled with 800 μl culture medium supplemented with 10% FBS. Following a 24 h incubation at 37°C, the cells were fixed with ice-cold methanol for 10 min and stained with 0.5% in PBS crystal violet for 15 min at room temperature. Images were captured using an Olympus IX51 microscope with 10× magnification.
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3

Histological and Autophagy Analysis of Liver Tissues

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Liver tissues were collected and fixed in 4% paraformaldehyde overnight. Then, the paraffin-embedded tissues from seven mice of each group were sectioned, dewaxed and hydrated. HE staining and Masson staining were conducted for eggs granulomas and fibrosis analysis, respectively. Pictures were obtained by an Olympus IX51 microscope. The percentages of eggs granulomas and fibrosis were analyzed by Image-Pro Plus 6.0 software.
Autophagy was determined with immunofluorescence using LC3 antibody (3868, Cell Signaling Technology, Boston, United States). In detail, sections with 4 μm thickness were dewaxed and gradiently hydrated. After washing with PBS three times, 3% hydrogen peroxide was used to inactive the endogenous peroxidase for 10 minutes. And 5% bovine serum albumin was used for blocking sections for 1 hour. The primary LC3 antibody (1:200) was added to the sections and incubated at 4°C overnight. PBS was used as a negative control. Then, the corresponding secondary antibody (SA00013-4, Proteintech, Chicago, United States) was applied for 1 hour incubation. After washing, sections were covered with an anti-fade mounting medium containing DAPI. Images were captured by an Olympus IX51 microscope. Cells with LC3 dots were numbered.
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4

Histological and Immunostaining Analysis of Heart and Lungs

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Heart and lungs were flushed with PBS. Lungs were inflate‐fixed for 5 min with 4% paraformaldehyde (PFA) then fixed overnight. Organs were embedded in paraffin and sectioned at a thickness of 6 μm. Sections were stained with hematoxylin and eosin (H&E) to visualize morphology and pulmonary vascularization. H&E stained slides were imaged on an Olympus BX51 with a 40x objective, an Olympus SZX7 at 2x magnification, and a Keyence BZ‐X810 with a 40x objective. Pentachrome staining to visualize heart valve morphology and composition was performed with StatLab kit (NC932114). Pentachrome stained slides were imaged on an Olympus IX51 microscope with a 10x objective. For immunostaining to detect Acta2 protein, slides were incubated in 10mM sodium citrate buffer (pH 6) then blocked in blocking buffer (1% bovine serum albumin, 0.1% fish skin gelatin, 0.1% Triton X‐100 in PBS). Sections were incubated with Acta2 primary antibody (1:500, Sigma A2547) overnight at 4℃, followed by a 1‐h room temperature incubation with secondary antibody donkey anti‐mouse Alexafluor 568 (1:400, Life Technologies A10037). Slides were mounted in Vectashield Hardset Antifade mounting medium with DAPI (Vector Labs) and imaged on an Olympus IX51 microscope with a 40x objective. Image analysis was performed using ImageJ software.
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5

Immunofluorescence Analysis of ECM Components

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MSC-deposited matrix (with and without decellularization) was fixed in 4% paraformaldehyde for 15 min and blocked in 1% bovine serum albumin (BSA) for 1 h. The samples were incubated in the appropriately diluted primary antibody against Col I or FN at 4°C overnight, followed by the Alexa Fluor® 594 goat anti-mouse IgG (H+L) secondary antibody (Thermo Fisher Scientific) for 30 min. The cell nuclei were counterstained with 4’,6-diamidino-2-phenylindole (DAPI). Fluorescence images were obtained with an Olympus IX51 microscope (Olympus Corporation, Tokyo, Japan). To assess F-actin, UC-MSCs cultured on TCPS and ECM substrates were incubated in CytoPainter Phalloidin-iFluor 488 Reagent (Abcam) at room temperature for 1 h. After rinsing with PBS, the cell nuclei were counterstained with DAPI and fluorescent images were captured with an Olympus IX51 microscope.
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6

Gliosphere Formation Assay with TMZ and MET

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To test the effect of two agents (TMZ and/or MET) on gliosphere formation, after primary sphere formation was observed, gliospheres were dissociated and plated in 96-well plates (5×103/ml/well) in NBM with B27, N2, glutaMAX, 2 µg/ml heparin and 20 ng/ml EGF+bFGF in the absence or presence of TMZ, MET or TMZ plus MET. Cultures were fed 0.02 ml of NBM every 2 days and images were captured (x200 magnification) after 7 days using IX51 Olympus microscope. To determine the gliosphere counts, U87 and C6 gliospheres were dissociated and plated in 96-well plates (5×103/ml/well) in NBM with B27, N2, glutaMAX, 2 µg/ml heparin and 20 ng/ml EGF+bFGF in the presence of TMZ, MET or TMZ plus MET for 7 days and the number of gliospheres counted under IX51 Olympus microscope.
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7

Evaluating LPA-Induced Cell Adhesion and Survival

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Briefly, 3 × 103 EBTr cells were seeded in 96-well cell culture plates (SPL Life Sciences, Pocheon, Korea). After 24 h, cells were treated with 100 µM LPA (Sigma-Aldrich) in the presence or absence of 5 or 20 µM KA-1002 in triplicate. For analysis of cell adhesion, adherent and unattached cells were counted using an IX51 microscope (Olympus Optical Co., Center Valley, PA, USA). Images were processed and anayyzed using Imaris software (Oxford Instruments). For analysis of the survival rate of EBTr cells, cells were harvested and stained with 7-aminoactinomycin D (7-ADD) ((Thermo Fisher Scientific, Waltham, MA, USA). 7-ADD positive cells (dead cells) and 7-ADD negative cells (live cells) were analyzed using FACS analysis. Staining data were collected using a MACSQuant VYB (Miltenyi Biotec, Bergisch Gladbach, North Rhine-Westphalia, Germany).
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8

Quantitative Cell Morphology Analysis

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Morphological changes were monitored using an Olympus IX51 microscope (Olympus Optical, Melville, NY). The effect of treatment on cell morphology was objectively measured using CellProfiler cell-imaging software (2.1.0)
[11 (link)].
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9

TRAP Staining of Osteoclasts

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BMMs were fixed using a 4% paraformaldehyde solution. The cells were stained with an acetate-buffered solution containing naphthol AS-BI phosphate and tartrate (Sigma-Aldrich) at 37°C for 1 h. TRAP-positive multinucleated cells were counted and photographed using an Olympus IX51 microscope.
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10

Immunocytochemical Analysis of Neuronal Plasticity

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Neurons were fixed using 4% PFA and stained for TH antibody as described above. Digital images of the immunocytochemical assays were captured with an Olympus IX51 microscope connected to an Olympus digital camera and analyzed using ImageJ software. The morphologic indicators of structural plasticity were maximal dendrite length, primary dendrite number and soma area. Three slides per treatment group were examined to obtain measurements from at least 30 neurons.
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