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153 protocols using sigmaplot

1

Elemental Analysis of Nutrient Profiles

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All lab analyses were completed with three replications. Elemental statistical correlation analysis was performed using SigmaPlot (SPSS Inc., Chicago, IL, USA), as described previously [9 (link)]. Descriptive statistics for each macro- and micronutrients and varieties were determined using the average of the ICP-MS results from the three biological replications. Graphs were made with SigmaPlot software (SPSS Inc., Chicago, IL, USA).
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2

Anthocyanin Degradation Kinetics

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The degradation reaction of anthocyanins follows the first-order reaction [29 (link)], and the rate of the degradation reaction is related to the anthocyanin content in the heating process. The equation can be expressed as follows:

C0: initial anthocyanin content. Ct: heat t time anthocyanin content; k: reaction constant. t: heat time (min). t1/2: the half-life.
Activation energy calculation: The Arrhenius equation can be expressed as the relation between the reaction rate constant and the temperature.


A: proportional constant of the reaction. Ea: the activation energy (kJ/mol); R: the gas universal constant (8.314 J/mol/k). T: the temperature (K).
The Ea value was calculated from the slope of the straight lines using a linear regression procedure of the SigmaPlot (SigmaPlot 10.0 Windows version, SPSS Inc., Chicago, IL, USA).
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3

Dose-Response Analysis of Potassium Channels

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The software of Clampfit (Molecular Devices, Sunnyvale, CA, USA) and Sigmaplot (IBM SPSS, Chicago, IL, USA) were applied to analyze the electrophysiological data. In order to obtain IC50 values, the concentrations of peptides and currents of potassium channels were used to fit the modified Hill equation for dose–response relationships: Ipeptide/Icontrol = 1/[1 + Cpeptide/IC50], in which Ipeptide and Icontrol represent the peak tail current of potassium channels in the presence and absence of peptide, Cpeptide represents the concentration of peptides and IC50 represents the half-maximum inhibition concentration. The results are presented as the mean ± SE.
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4

Quantitative Analysis of Gene Expression

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Animal numbers were determined beforehand using a power calculation (Gpower). All statistical tests were performed using SPSS 17.0 (IBM SPSS, Inc., Chicago, IL, USA) and data presented as mean ± standard error of the mean (SEM) with graphs constructed using SigmaPlot (San Jose, CA, USA). The Shapiro-Wilkes test was used to ensure all data were normally distributed before parametric testing using a one-way analysis of variance (ANOVA) with a Tukey post hoc test. Statistical differences were considered significant at P values <0.05. For the quantitative real-time polymerase chain reaction (qRT)-PCR, data were compared by a Student's t-test and statistical significance set at P < 0.001.
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5

Assessing Reaching Performance in Neurological Disorders

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Statistical analyses were performed using SigmaPlot and SPSS (IBM, Armonk, NY). Kolmogorov-Smirnov tests determined the normality of data distributions. A one-way ANCOVA was conducted using SPSS to determine whether differences existed between the three groups (AIS, PVI, controls) for each reaching parameter while controlling for age. Post-hoc pairwise comparisons were then conducted using Bonferroni corrections for multiple comparisons (α = 0.05). Within each group, Mann-Whitney U-tests or paired t-tests compared performance between both upper limbs and between out and back performance of each limb. Partial Spearman’s correlations controlling for age assessed the relationship of bilateral reaching parameters with clinical assessments (controlled for comparisons to 6 clinical measures, α = 0.05, p < 0.008). In the case of missing clinical data, participants were removed from the analysis.
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6

Statistical Analysis of Experimental Data

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Statistical analysis included an analysis of the variance with a t-test (Shapiro–Wilk test, equal variance test, and Mann–Whitney rank-sum test), performed using SigmaPlot version 12.0 (IBM Corp., Armonk, NY, USA). Data are presented as the means of at least three independent experiments. A p < 0.05 was considered statistically significant.
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7

Statistical Analysis of Continuous Variables

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Normal distribution was examined by D’Agostino-Pearson and Shapiro-Wilk tests. Continuous variables are presented as mean ± SD. Comparisons were performed with the use of Mann-Whiney U test and unpaired t-test for not normally and normally distributed parameters, respectively. Spearman’s test was used to examine correlations. If both parameters were normally distributed, Pearson test was used, instead. The level of statistical significance was set at p<0.05. Statistical analysis was performed in SigmaPlot, SPSS v.26 (IBM, USA) and GraphPad Prism 5.00 (GraphPad Software, Inc., USA).
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8

Prognostic Value of miR-18a in HCC

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All data were expressed in terms of mean ± SD. The relationship between miR-18a and clinical pathology features of patients with HCC was analyzed by the chi-squared test. Kaplan–Meier and log-rank tests were carried out to determine how varying miR-18a expression levels affected HCC patient survival. The prognostic value of miR-18a was determined by Cox regression analysis. Continuous data were analyzed using a t-test or one-way ANOVA. The correlation between miR-18a and Bcl2L10 was analyzed utilizing Spearman or Pearson correlation analysis. All statistical analyses were carried out with the SigmaPlot software (SPSS 19.0; IBM Corporation, Armonk, NY, USA). A P-value of <0.05 was taken to indicate statistical significance. All values are the representative of three separate experiments.
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9

Kinetic Analysis of Enzymatic Reactions

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All of the data represent an average of at least three independent experiments or measurements. Data are presented as mean ± standard deviation. The kinetic parameters and the curves were estimated and fitted using a linear or nonlinear regression iteration procedure using SigmaPlot (V10.0; IBM Co., Armonk, NY, USA). Statistical analyses were firstly started by examination of the data using the distribution normality test (Shapiro–Wilk test) and the variance homogeneity test (Levene’s test). If normal distribution and homogeneous variance were guaranteed, further statistical analyses (Tukey’s test or Student’s t-test) were conducted using SPSS Statistics (V23.0; IBM Co., Armonk, NY, USA).
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10

Prognostic Signature for Clinical Outcomes

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All quantitative features were analyzed with SPSS 25. P<0.05 was considered as statistically significant.
Categorical variables are shown as frequencies, and continuous variables are presented as the mean and standard deviation or median and interquartile range. The χ2 test was used to analyze the categorical variables, the t test was applied to analyze the continuous variables with a normal distribution, and the Mann−Whitney U test was used for variables with an abnormal or unknown distribution. Multivariable logistic regression analysis was used to select the independent prognostic factors. The performance of the model was assessed in the primary and validation cohorts. The discrimination of the signature was measured by the area under the curve (AUC).
The ICC was graded as follows: poor (<0.20), moderate (0.20–0.40), fair (0.40–0.60), good (0.60–0.80), or very good (0.80–1.00).
Statistical analyses were performed using SPSS software (Ver. 25, IBM, Armonk, New York), SigmaPlot (Ver. 14.0), R software package (Ver. 3.5.2, R Development Core Team: https://www.r-project.org/), and the Python scikit-learn package (Ver. 3.7, scikit-learn Ver. 0.21, http://scikit-learn.org/).
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