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39 protocols using gapdh

1

Analyzing NF-κB and TLR4 Pathways in Renal Cells

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Protein was isolated from HK-2 cells or renal tissue using RIPA solution. The lysate was applied to 12% polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membrane. The membrane was blocked by 5% milk and combined with nf-b p65 (Abeam, Cambridge, MA, USA), TLR4 (Abeam, Cambridge, MA, USA), and GAPDH (Origene, Rockville, MD, USA).
It was placed overnight in the refrigerator at 4 ° C. After that, it was incubated with antirabbit IgG for 2 h at 37 ° C. GAPDH antibody was used as an internal standard. The ECL Western blotting kit was used to detect all the protein bands.
Statistical Method SPSS 19.0 software was used to analyze the monitored data. Mean ± SD was used to represent the data analysis results. T test was carried out on the data analysis results of the 2 groups, and one-way ANOVA was used to analyze the data between groups. LSD test was used in the subsequent analysis. p < 0.05 showed that the difference was statistically significant.
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2

Comprehensive Protein Analysis Protocol

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Total RNA was isolated using RNA-Bee™ (CS-105B; AMS Biotechnology, Europe) according to the manufacturer's protocol. Total cellular protein extracts were prepared and analysed by western blotting as described elsewhere (40 (link)). The following primary antibodies were used: P4HB/PDI (Acris, #AP17615PU-N); P4H-α(I) (Acris, #AF0210); β-Actin (Millipore, #MAB1501R); HIF-1α (BD Biosciences, #610959); BLID (Abnova, #H00414899-B01); Tubulin β (Proteintech™, #10063–2-AP); GAPDH (Acris, #BM439); Aromatase/Cytochrome P450 (Acris, #AP00001PU-N). Secondary antibodies were used according to the manufacturers’ recommendations.
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3

Western Blot Analysis of Mitochondrial Proteins

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Total protein was prepared as described in Hagenbuchner et al.21 (link). Proteins were separated by SDS-PAGE and blotted on nitrocellulose membrane (GE Healthcare, Chalfot, UK). After blocking, membranes were incubated with primary antibodies against MFN1, MFN2, DNM1L, and OXPHOS (Abcam, Cambridge, UK), pDNM1L(Ser637) and α-Tubulin (Cell Signaling Technology Inc., Boston, USA), and GAPDH (Acris, Herford, Germany) washed and incubated with horseradish-peroxidase conjugated secondary antibody (GE Healthcare, UK). The immunoblots were developed by enhanced chemiluminescence (GE Healthcare, Chalfont, UK) according to manufacturer’s instructions and analyzed using an AutoChemi detection system (UVP, Cambridge, UK). Densitometry was performed using Labworks software version 4.5 (UVP, UK). Uncropped blots of three independently generated panels are shown in Supplemental Fig. 1.
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4

Chlamydia Antibodies Immunodetection

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Antibodies against chlamydia (C. trachomatis, C. psittaci, and C. abortus), chlHSP60 (MAb A57-B9), cellular β-tubulin, and GAPDH, were obtained from Acris, Sigma-Aldrich, and Abcam. In addition, the fluorescein isothiocyanate (FITC)-conjugated mouse anti-chlamydia MAb (part of the IMAGEN Chlamydia Kit) was purchased from Oxoid. All of the secondary and isotype-control antibodies were purchased from Dianova and BioLegend.
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5

Quantitative Analysis of Gene Expression

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The total RNA was extracted using TRIzol reagent (Invitrogen Inc., Carlsbad, CA, United States). Reverse transcription of miRNA was performed using a transcription kit (Shanghai GeneChem Co., Ltd., Shanghai, China) with RNA U6 as an internal control. mRNA was detected using a reverse transcription kit (Takara Biotechnology Ltd., Dalian, Liaoning, China) with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) sequence as an internal reference for the normalization of RT-PCR. SYBR Green quantitative PCR analysis was performed using a 7500 real-time fluorescence quantitative PCR system.
The expression levels of target genes were then estimated using the 2−ΔΔCT method. 17 (link)
, 18 (link)
Primers STAT1 (#HP210040), JAK2 (#HP208201), IRF-1 (HP205934), PD-L1 (#HP210654), IFN-γ (#HP200586), NF-κB (#HP207409), Bcl-xL (#HP234144), COX-2 (#HP200900), GAPDH (#HP205798), and β-catenin (#KN208947) were purchased from OriGene Technologies (Beijing, China).
The sequence of primers is presented in table 1.
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6

Western Blot Protein Detection Assay

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Protein was harvested and western blot performed as described (21 (link),22 (link)) using the following antibodies: RRM1 (Cell Signaling #8637, RRID:AB_11217623), STIM1 (Sigma-Aldrich S6197, RRID:AB_1079007), ATF4 (Cell Signaling #11815, RRID:AB_2616025), HA (Roche #3F10, RRID:AB_2314622), GAPDH (Origene #TA802519, RRID:AB_2626378), HSC70 (Santa Cruz #sc-7298, RRID:AB_627761), anti-rabbit IgG (Jackson ImmunoResearch Labs #211-032-171, RRID:AB_2339149) and anti-mouse IgG (Jackson ImmunoResearch Labs #115-035-174, RRID:AB_2338512). Further details are in Supplemental Material and Methods.
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7

Nrf2 Activation Induces Antioxidant Genes

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HepG2 cells were treated with either free Nrf2 or DART-Nrf2 in culture media for 24 h and the RNA was extracted from the cells using the RNeasy® Mini Kit with additional DNase I digestion (Qiagen, Hilden, Germany), according to the manufacturer’s protocol. RNA purity and concentration were determined by measuring the optical density using an ND-1000 Spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE, USA). Purified mRNAs were normalized by total mRNA concentration, and Qiagen one-step RT-PCR was conducted with primers for HO1, NQO1, GCLC, and GAPDH, which were purchased from Origene. Amplified DNAs were visualized with a ChemiDoc XRS system, after gel electrophoresis in a 1% agarose gel and staining with SYBR safe.
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8

Western Blot Analysis of Renal Proteins

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Proteins were extracted from renal tissues or cultured cells with a RIPA lysis buffer and analyzed via Western blotting. Briefly, after the protein was transferred onto a PVDF membrane (Bio-Rad, Hercules, CA, USA), the membrane was blocked with 5% nonfat milk in Tris-buffered saline (TBS) containing 0.1% Tween-20 (TBS/T) for 1 h. The membranes were incubated with primary antibodies against phosphor-p53 (Ser 15) and P53 (Novus Biologicals), cleaved-caspase-3 (Cell Signaling Technology) and GAPDH (Origene) overnight at 4 °C. The membranes were washed three times with 10 mL of TBS/T and then incubated with secondary antibodies (R&D Systems) for 1 h at room temperature. After the membranes were washed three times with TBS/T, the proteins on the membrane were visualized with an enhanced chemiluminescence reagent (Millipore Corporation, Boston, MA, USA). The signals were detected with an Odyssey Infrared Imaging System (Bio-Rad, ChemiDoc MP, mANUSC, Bio-Rad Laboratories Inc., Hercules, CA, USA) and quantified with the Image J program (National Institutes of Health). The ratio for the protein examined was normalized against GAPDH.
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9

Western Blot Protein Analysis Protocol

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Protein levels were detected using Western blot as previously reported 14 (link). The following antibodies were used: P16 (Proteintech), GAPDH (OriGene), MYC (Sigma).
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10

Quantitative Western Blot Analysis

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Treated HASMCs and PBMNCs were lysed in RIPA buffer and protein content was determined using a BCA Protein Assay Kit (cat. P0011, Beyotime). Proteins were separated by 12% or 9% SDS-PAGE and transferred to PVDF membranes (Millipore, MA, USA). Primary antibodies against WNT3 (cat. GTX89319; Gene Tex, CA, USA), β-catenin (cat. GTX101435-S; Gene Tex), calcium/calmodulin-dependent protein kinase II inhibitor 2 (CAMK2N2, cat. TA322113S; Origene, MD, USA), and GAPDH (cat. TA-08; ZSGB-BIO, Beijing, China) were applied at 4 °C overnight. Subsequently, a horseradish peroxidase-conjugated secondary antibody (1:10000) was applied at room temperature for 1 h. The signals were detected with a SuperSignal West Femto Trial Kit (Thermo Fisher Scientific). Relative protein content was analyzed by ImageJ software and normalized to loading controls.
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