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59 protocols using carboplatin

1

Establishing Carboplatin-Resistant Ovarian Cancer Cell Lines

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Human OC cell lines (A2780, HO8910, and OVCAR3) were purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). All human cell lines have been authenticated using STR profiling. Cells were cultured in Dulbecco’s modified Eagle medium (DMEM, Invitrogen) supplemented with 10% fetal bovine serum (FBS, Gibco) and 1% penicillin/streptomycin (HyClone); the incubation was carried out at 37 °C in a 5% CO2 atmosphere. HLF knockdown; YAP1 knockdown; control lentiviruses (designated as shHLF, shYAP1, and shCtrl); and lentiviruses expressing Flag-HLF, Flag-YAP1, or Flag (designated as HLF, YAP1, and Control) were obtained from Obio Technology Co. (Shanghai, China). The miR-520e sponge and mimic viruses were purchased from GenePharma (Shanghai, China). siRNA sequences are listed in Supplementary Table S7.
In order to establish carboplatin-resistant cell lines, A2780, HO8910, and OVCAR3 cells were incubated with carboplatin (Selleck, S1215) at a concentration just below their IC50; the concentration of carboplatin was gradually increased by 0.2 μM/L per week for 6–7 months. Three carboplatin-resistant cell lines, A2780CR, HO8910CR, and OVCAR3CR, were obtained. These carboplatin-resistant cell lines were maintained by continuous culture in the presence of carboplatin.
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2

Preparation and Formulation of Anticancer Agents

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For in vitro studies, 6-thio-dG (Metkinen Oy, Kuopio, Finland) was dissolved in DMSO/water (1:1) to prepare 10 mM stock solutions, which were kept frozen at −20°C. A 1 mM, final concentration stock was prepared for in vitro experiments and added in fresh medium at different concentrations. Erlotinib HCl (Selleckchem, Houston, TX) was dissolved in DMSO to prepare 10 mM stock solutions, which were kept frozen at −80°C. A 2.5 μM erlotinib final concentration was used for in vitro experiments. Osimertinib and paclitaxel (Selleckchem) were dissolved in DMSO, and carboplatin (Selleckchem) was dissolved in water to prepare 10 mM stock solutions, which were kept frozen at −80°C. A 1 mM final concentration stock was prepared for in vitro experiments and added in fresh medium at different concentrations.
For mouse in vivo studies, 6-thio-dG was prepared in 5% DMSO for intraperitoneal (i.p.) injection or 0.4% (hydroxypropyl)methyl cellulose (Sigma, Saint Louis, MO) for oral gavage. Erlotinib was prepared in 15% Captisol (β-cyclodextrin, sulfobutyl ethers, sodium salts) (Cydex Pharmaceuticals, Lawrence, KS) for oral gavage. Gemcitabine HCl and cisplatin (Selleckchem) were dissolved in 0.9% NaCl saline solution for i.p. injections.
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3

Generating Cisplatin-Resistant NSCLC Cell Lines

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Drugs including cisplatin, carboplatin, and paclitaxel were purchased from Selleckchem (Houston, TX, USA). For the generation of CR NSCLC cell lines, the starting concentration of cisplatin in A549 cell cultures was 1 µM, while the final concentration reached 12 µM within 3 weeks. In the PC9 cell cultures starting concentration of cisplatin was 0.67 µM that was increased to 4.67 µM within 3 weeks. carboplatin and paclitaxel treatment were applied for 24 h in 100 µM and in 0.002 µM concentrations, respectively.
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4

Compound Synthesis and Immobilization

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A-674563, Carboplatin, FRAX1036, and PF-03758309 were purchased from Selleckchem. BDP5290 and BDP9066 were purchased from Glixx Labs and ProbeChem respectively (Data file S10). For the compounds utilized in MIB synthesis, Purvalanol B was purchased from Abcam. PP58 (42 (link)) and VI16832 (43 (link)) were custom synthesized according to previously described methods by The Center for Combinatorial Chemistry and Drug Discovery, Jilin University, P.R. China. CTx-0294885 (44 (link)) was purchased from MedKoo Biosciences, Inc (406457). Conjugation of inhibitors to beads was performed by carbodiimide coupling to ECH Sepharose 4B (CTx-0294885, VI16832 and PP58) or EAH Sepharose 4B (purvalanol B) (GE Healthcare).
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5

Combinatorial Drug Cytotoxicity Assay

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Inhibitors were purchased from SelleckChem (H89.2HCl, BI‐D1870, LJH685, Trametinib) or Cell Signaling Technologies (UO126, LY294002, BYL‐719) and diluted in DMSO. Refametinib (Chemietek) was diluted in water.
For combinatorial treatments, cells were treated with the indicated inhibitors for 30 min before addition of cisplatin (Sigma) or carboplatin (SelleckChem). Cytotoxicity was assessed after 72 h using CellTiter‐Glo Luminescent Cell Viability Assay (Promega) for 5–20 min before luminescence detection.
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6

Combination Therapy Evaluation

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Carboplatin (S1215), olaparib (AZD2881) (S1060), niraparib (MK4827) (S7625), LY294002 (S1105), and crizotinib (S1068), were purchased from Selleck Chemicals (Houston, TX).
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7

Antibody-Based Protein Detection Assay

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Anti-human primary antibodies to ERα (sc8002), GCS (sc50551), acid ceramidase (sc28486), and secondary horseradish peroxidase-conjugated antibodies for mouse (sc2005), rabbit (sc2054), and goat (sc2020) IgG were from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-cleaved caspase-3 (#9661), -cleaved PARP (#5625), -p21 (#2964), -GAPDH (#97166), and - cyclinD1 (#2926) were from Cell Signaling (Danvers, MA). Anti-ERα (108398), -SPHK1 (ab77107), -SPHK2 (ab37977), -Ki67 (ab92742) were from Abcam (Cambridge, MA). Anti-β-actin (A5441) was from Sigma (St. Louis, MO). The monoclonal antibody specific to C16- and C24-of ceramide (MID 15B4) and tamoxifen citrate were purchased from Enzo Life Sciences (Farmingdale, NY). Fingolimod (FTY720) HCl, and carboplatin were purchased from Selleck Chemicals (Houston, TX) and MedChem Express (Monmouth Junction, NJ).
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8

Evaluation of Anti-Cancer Compounds

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Purchased human cancer cell lines included: (1) ES-2, HO-8910 PM and SW620 (Shanghai Institute of Biochemistry and Cell Biology); (2) HCC827, NCI-H1650, NCI-H1975, HepG2, and IMR-32 (American Type Culture Collection; Manassas, VA); and (3) OVCAR-3 (China Center for Type Culture Collection; Wuhan). All other human lines were obtained from Cobio Biosciences (Nanjing, China). Murine pro-B cell lines BaF3 and BaF3_EML4-ALKG1202R were purchased from KYinoo (Beijing). Other BaF3-engineered cell lines were constructed internally. An osimertinib-resistant parental cell (PC-9/OR) line was established by exposing PC-9 cells to escalating concentrations of osimertinib for 3 months.
APG-2449 was synthesized by Ascentage Pharma. Alectinib, ceritinib, crizotinib, defactinib, erlotinib, lorlatinib, osimertinib, and trametinib, as well as paclitaxel and carboplatin, were purchased from Selleckchem (Houston, TX). Ensartinib was purchased from Birdo Tech (Shanghai).
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9

Comprehensive Cell Imaging Protocol

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TRITON X-100, Trizma Base, Trichloroacetic acid solution (TCA), Sulforhodamine-B Sodium salt, CID-1067700, Geranylgeranyl pyrophosphate ammonium salt (GGPP), Simvastatin, DMSO, MCDB105 and Medium199 were purchased from Sigma Aldrich (Stockholm, Sweden). Carboplatin was purchased from Selleck Chemicals (SMS-gruppen, Rungsted, Denmark). Phalloidin CruzFluor™ 488 Conjugate was purchased from Santa Cruz (AH diagnostics AB, Solna, Sweden). Penicillin/Streptomycin solution (P/S), Fetal Bovine Serum (FBS), DPBS, DMEM: F12, RPMI1640 and Dulbecco’s Modified Eagle’s Medium (DMEM) were purchased from Nordic Biolabs (Täby, Sweden). Paraformaldehyde 16% w/v (PFA) was purchased from VWR (Spånga, Sweden). DAPI was purchased from Thermo Fisher (Göteborg, Sweden). Pan Caspase inhibitor Z-VAD-FMK was purchased from Promega (Nacka, Sweden).
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10

Cytotoxicity Assays for Cancer Cells

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293T cells, human lung cancer cell lines A549 and H1299, and human breast cancer cell line MB231 were obtained from the American Type Culture Collection. ES-2 (an ovarian cancer cell line) and SW480 (a colon cancer cell line) were given by University Shanghai Cancer Center. Cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM, hyclone, Logan, UT), containing 10% fetal bovine serum (Biochrom AG, Berlin, Germany) and 1% penicillin–streptomycin solution at 37 °C with 5% carbon dioxide.
For CHX-chase experiments, cells were treated with 50 μg/mL CHX (Sigma, C4859) in combination with 10 μM MG-132 (Sigma, M7447) or DMSO for indicated time points; cells were treated with 50 μg/mL CHX (Sigma, C4859) in combination with 48 h treatment of 4 μΜ ciaplatin (Selleck, S1166), 20 μg/mL carboplatin (Selleck, S1215) or PBS for indicated time points.
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