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Ezchrom elite software

Manufactured by Agilent Technologies
Sourced in United States, France

EZChrom Elite is a chromatography data software that provides data acquisition, analysis, and reporting capabilities for analytical laboratories. It is designed to manage data from a variety of chromatography instruments, including gas and liquid chromatographs. The software offers features for data processing, peak integration, and report generation to support analytical workflows.

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35 protocols using ezchrom elite software

1

HPLC Analysis of Bilberry Anthocyanins

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HPLC analysis of the studied extract was performed using a LaChrom Elite system (VWR-Hitachi, Radnor, PA, USA) equipped with two L7100 pumps, a L7200 autosampler, a L2450 diode array detector (DAD) performing the wavelength scanning from 200 nm to 600 nm, and EZ Chrom Elite software (Agilent Technologies, Massy, France). AEVM (1 mg/mL) was chromatographed with a reversed phase Interchim® UP3ODB C18 column (150 × 4.6 mm, 5 μm particle size). Gradient elution was developed with a mobile phase composed of water containing 1% phosphoric acid (A) and MeCN (B). The gradient was set as follows: 0–10 min, 9% B; 10–25 min, 9–12% B; 25–40 min, 12–16% B; 40–45 min, 16% B; 45–50 min, 16–40% B; 50–55 min, 9% B. A flow rate of 1 mL/min and an injection volume of 20 μL were selected. The quantification of individual anthocyanins was achieved by constructing calibration curves with commercial anthocyanin constituents that were representative of the five different groups occurring in bilberry (delphinidin, cyanidin, petunidin, malvidin and peonidin 3-O-glucosides). Standard solutions in the concentration range of 5–100 μg/mL were injected, and the chromatograms were monitored at a wavelength of 530 nm. Five-point calibration curves were constructed, and all of them exhibited satisfying linearities (R2 > 0.99). Results were expressed as mg of constituent per g of dry extract.
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2

Plasma Lipid Profiling in Mice

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Within 15 min after blood collection, plasma was separated by centrifugation (15 min at 2000 RPM). Plasma total triglycerides (Total TG) and total cholesterol (Total Chol) were measured by enzymatic assay using commercially available kits (Roche Diagnostics GmbH, Mannheim and mti Diagnostic GmbH, Idstein, Germany). Cholesterol lipoprotein fractions in serum were determined as described79 (link). Briefly, sera from each individual mouse were separated by size exclusion chromatography using a Superose and PC 3.2/30 column (Pharmacia Biotech, Uppsala, Sweden). Reagent (Roche Diagnostic, Mannheim, Germany) was directly infused into the eluate online and the absorbance was measured. The concentration of the different lipoprotein fractions was calculated from the area under the curves of the elution profiles by using the EZChrom Elite software (Scientific Software; Agilent Technologies, Santa Clara, CA).
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3

Temperature-Dependent Solute Retention Analysis

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A Jasco X-LC system composed of a 3059AS autosampler, dual 3085PU pumps, 3080DG degasser, 3080MX high pressure mixer, CO-2060 thermostated column compartment, 3177UV variable wavelength UV absorbance detector and LC-Net II/ADC from Jasco Inc. (Easton, MD) was used to evaluate the temperature dependence of solute retention. Instrument control and data analysis was achieved using EzChrom Elite software (version 3.2.1, Agilent Technologies, Santa Clara, CA)
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4

Lipid Profiling of Drosophila Heads

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Lipids were extracted from Drosophila heads (3 pools of 30 heads) according to the Folch method and submitted to transmethylation of the fatty acids using boron trifluoride in methanol according to Morrison and Smith [31 (link),32 (link)]. Fatty acid methyl esters were subsequently extracted with hexane and analyzed using gas chromatography on a Hewlett Packard Model 5890 gas chromatograph (Palo Alto, CA, USA) using a CPSIL-88 column (100 m × 0.25 mm i.d., 0.20 μm film thickness, Varian, Les Ulis, France) equipped with a flame ionization detector. Hydrogen was used as the carrier gas (inlet pressure, 210 kPa). The oven temperature was held at 60°C for 5 min, increased to 165°C at 15°C/min and held for 1 min and then to 225 C at 2°C/min and finally held at 225°C for 17 min. The injector and the detector were maintained at 250°C. Fatty acid methyl esters were identified by comparison to commercial and synthetic standards (Sigma Aldrich, L’Isle d’Abeau, France). The data were processed using the EZChrom Elite software (Agilent Technologies, Massy, France) and reported as a percentage of the total fatty acids.
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5

Characterization of Anti-EGFR Antibody Variants

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VH and VL domain fragments from selected anti-EGFR scFvs were subcloned into the expression vector pMH3 to generate the full-length human IgG1 (Cκ) format. The cetuximab variants Ctx-Y104X constructs were generated by site-directed mutagenesis. Primers used in this experiment were listed in Supplementary Table 9. For the control antibody, the VH and VL domains of another anti-EGFR antibody, panitumumab, were cloned into the expression vector pMH3 to generate full-length human IgG2/κ. Recombinant antibodies were produced in HEK293F cells through transient transfection. Antibodies were purified from culture supernatants using a HiTrap Protein A column (GE Healthcare, PA, USA) in an ÄKTA pure system (GE Healthcare, PA, USA) and were dialyzed against PBS (pH 7.4). The purity and homogeneity of cetuximab variants were analyzed by size-exclusion chromatography-high performance liquid chromatography (SEC-HPLC) and date was acquired with the Agilent 1200 & EZChrom Elite software (Agilent Technologies, Palo Alto, CA, USA). The stability of cetuximab variants were analyzed by dynamic light scattering (DLS). LitesizerTM 500 (Anton paar, USA) was used for DLS data acquisition.
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6

Plasma Lipid Fatty Acid Profiling

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All chemical reagents were purchased from Sigma-Aldrich (St Quentin, Fallavier, France), and chloroform and methanol were purchased from SDS (Peypin, France). Total lipids were extracted from total plasma, erythrocytes, and LDL- and HDL-fractions according to Moilanen and Nikkari [29 (link)]. Total phospholipids from total plasma, erythrocyte membranes, and LDL- and HDL fractions were transmethylated using boron trifluoride in methanol according to Morrison and Smith [30 (link)]. Fatty acid methyl esters (FAMEs) were extracted with hexane and analyzed by gas chromatography on a Hewlett Packard Model 5890 gas chromatograph (Hewlett-Packard, Palo Alto, CA, USA) using a CPSIL-88 column (100 m × 0.25 mm i.d., film thickness 0.20 µm; Varian, Les Ulis, France) equipped with a flame ionization detector. Hydrogen was used as the carrier gas (inlet pressure 210 kPa). The oven temperature was held at 60 °C for 5 min, increased to 165 °C at 15 °C/min and held for 1 min, and then to 225 °C at 2 °C/min, and finally held at 225 °C for 17 min. The injector and the detector were maintained at 250 °C. FAMEs were identified by comparison with commercial and synthetic standards. The data were processed using EZChrom Elite software (Agilent Technologies, Massy, France) and reported as a percentage (mole %) of the total fatty acids.
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7

Maternal and Cord Blood Fatty Acid Profiling

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The red blood cell FA composition for maternal and cord blood samples will be determined according to previously described procedures [36 (link), 40 (link)]: Total lipids are extracted from erythrocytes, according to Moilanen and Nikkari [41 (link)]. Phospholipids are purified from total lipid extracts using silica cartridges [42 (link)], and transmethylated using boron trifluoride in methanol [43 (link)]. The fatty acid methyl esters (FAMEs) and dimethyl acetals (DMAs) are extracted with hexane and analyzed on a Hewlett Packard Model 5890 gas chromatograph using a CPSIL-88 column (100 mm × 0.25 mm i.d., film thickness 0.20 mm; Varian, Les Ulis, France) equipped with a flame ionization detector. Hydrogen is used as the carrier gas (inlet pressure 210 kPa). The oven temperature is held at 60 °C for 5 min, increased to 165 °C at 15 °C/min, held for 1 min, and then increased to 225 °C at 2 °C/min and finally kept at 225 °C for 17 min. The injector and the detector are maintained at 250 °C. FAMEs are identified by comparison with commercial and synthetic standards. The data will be processed using the EZChrom Elite software (Agilent Technologies, Massy, France) and reported as a percentage of the total FAMEs and DMAs [36 (link), 40 (link)].
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8

Quantification of NE, DA, and Metabolites

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For determination of NE, DA, and their metabolites (3, 4-dihydroxyphenylacetic acid (DOPAC) and homovanillic acid (HVA)), collected samples were loaded into an autosampler maintained at 4°C (Waters 717 Plus, Waters Chromatography Division, Milford, Massachusetts) and analyzed by isocratic liquid chromatography with electrochemical detection (LC-4C Amperometric Detector, BASi, West Lafayette, Indiana) at an oxidation potential of +700mV. Flow rate was 1.6 mL/min. The mobile phase consisted of 0.15 M monochloroacetate, pH 2.95, containing 1.3% acetonitrile (vol/vol), 1.7% tetrahydrofuran (vol/vol) (including 250 ppm butylated hydroxytoluene as an inhibitor), 0.86 mM sodium octylsulfate, and 0.18 mM EDTA, and was pumped through a 250 × 4.6mm, 5 μm Biophase ODS analytical column (PerkinElmer, Waltham, Massachusetts). Chromatographic peaks were quantified with EZChrom Elite software (Agilent Technologies, Pleasanton, California).
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9

Simultaneous Quantification of Reduced and Oxidized CoQ10 in Cells

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CoQ measurements were performed as previously described 30 (link). To simultaneously measure the reduced and oxidized form of CoQ10, a cold butylhydroxytoluene (BHT) solution was added to prevent auto-oxidation at the beginning of sample extraction. 100 μL of a cold BHT-in-propanol solution (5 mg/mL) and 600 μL of cold 1-propanol were added to each tube containing cells in the frozen state. Immediately after this, the mixture was subjected to sonication for 2 min. Subsequently, 100 μL of cold ubiquinone-9 solution (2 μg/mL), which was used as internal standard, was added, and the mixture was vortex-mixed for 1 min. It was then centrifuged for 10 min at 3500 rpm and 1°C, and the propanol organic supernatant layer was transferred to an autosampler vial. 100 μL aliquots of the 1-propanol extract were immediately analyzed and the reduced and oxidized CoQ10 levels were determined using HPLC. HPLC analysis was performed using an automated Hitachi Chromaster™ system equipped with a Model 5110 quaternary pump, Model 5210 autosampler, Model 5310 column oven and ESA CouloChem III detector. The EZChrom Elite® software (Agilent) was used for monitoring output signal and processing the results. The analytical column was a 150-mm x 4.6-mm C18 column with 5-μm spherical particles connected to a Security Guard equipped with a C18 cartridge (4-mm x 3-mm).
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10

Lipid Extraction and Fatty Acid Analysis

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Lipids were extracted from the different fractions (F2, F3/F3’, M, RET) exactly as according to our previous publications [36 , 37 (link)] based on the original Folch method [38 (link)]. PL were purified from total lipid extracts using silica cartridges, and total PL were transmethylated using boron trifluoride in methanol according to Morrison and Smith [39 ]. FA methyl esters (FAMEs) and dimethylacetals (DMAs) were identified by comparison with commercial and synthetic standards. The data were processed using the EZChrom Elite software (Agilent Technologies, Massy, France) and reported as the percentage of total FA. The structural analysis of PL was performed according to previously described procedures [36 , 37 (link) and references therein]. Similar analyses were performed for WT and Nrl−/− mice retinas divided into OR and IR fractions.
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