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Cy3 donkey anti rabbit igg

Manufactured by Jackson ImmunoResearch
Sourced in United States, United Kingdom

Cy3 donkey anti-rabbit IgG is a secondary antibody used for the detection and visualization of rabbit primary antibodies in immunoassays and other applications. It is conjugated with the fluorescent dye Cy3, which emits red-orange fluorescence upon excitation.

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33 protocols using cy3 donkey anti rabbit igg

1

Immunofluorescence and Western Blot Assays for Neuronal Markers

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Immunofluorescence: SOX10 (R&D Systems, 1:100, AF2864, RRID:AB_442208) donkey anti-goat IgG (H + L) Alexa Fluor 488 (Invitrogen, 1:1000, A11057), Anti-Beta III Tubulin (Sigma Aldrich, 1:1000, AB9354, RRID:AB_570918), NF200 (Abcam, 1:1000, ab72997, RRID:AB_1267598), SARM1 rabbit polyclonal antibodies (kind gift from Professor Hsueh, 1:500) and purchased from Abcam (Ab226930, 1:2000, RRID:AB_2893433), tdTomato (SICGEN, 1:500, RRID:AB_2722750) donkey anti-goat IgG (H + L) Alexa Fluor 488 (Invitrogen, 1:1000, A11057), Cy3 donkey anti-rabbit IgG (H + L) (Jackson Immunoresearch, 1:500, 711-165-152), Donkey anti-Mouse IgG (H + L) Highly Cross-Adsorbed Seco Alexa Fluor 488 (Invitrogen, 1:1000, A-21202), Donkey anti-Chicken IgY, Alexa Fluor 647 (Merck, 1:1000,15389818), DAPI (Thermo scientific, 1:2000, 62248).
Western blot: CALNEXIN (Enzo Life Sciences, 1:1000, ADI-SPA-860-D, RRID:AB_312058), JUN (Cell Signalling Technology, 1:1000, 9165, RRID:AB_2130165), EGR2 (EMD Millipore, 1:500, ABE1374, RRID:AB_2715555), MPZ (Aves Labs, 1:2000, PZO, RRID:AB_2313561), MBP (EMD Millipore, 1:1000, AB9348, RRID:AB_2140366), Anti-mouse IgG HRP-linked antibody (Cell Signaling Technology, 1:2000, 7076S), Anti-rabbit HRP-linked antibody (Cell Signaling Technology, 1:2000, 7074S), Goat pAb to Chicken IgY H + L (HRP) (Abcam, 1:2000, ab97135).
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2

Quantitative Histological Analysis of GPR41, CGRP, and F4/80 in Mouse Colon

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Immunohistochemistry and histology were performed according to the procedure described in previous reports [12 (link)]. Briefly, the excised distal colons were fixed with 4% paraformaldehyde for 24 h at 4 °C. The frozen sections (10 μm) for histology were then routinely stained with hematoxylin and eosin (H&E). The frozen sections (30 μm) for immunohistochemistry were exposed to a rabbit anti-human GPR41 antibody (ab236654, Abcam, Cambridge, MA, USA), goat anti-rat CGRP antibody (ab36001, Abcam) or rat anti-mouse F4/80 (MCA497GA, BioRad, Hercules, CA, USA) for 12–18 h and then incubated with the appropriate secondary antibodies for 2 h (Alexa 488 donkey anti-rabbit IgG), Cy3 donkey anti-rabbit IgG, Cy3 donkey anti-goat IgG or Alexa 488 donkey anti-rat IgG (Jackson ImmunoResearch Laboratories, West Grove, PA, USA). The immunostained sections were examined using a confocal microscope (LSM700 & LSM780, Carl Zeiss, Oberkochen, Germany). To avoid selection bias, three representative preparations were selected from each mouse colon and then three mucosal sites of each preparation were quantitatively analyzed using open-source software ImageJ (ImageJ bundled with 64-bit Java 1.8.0_172; a Java-based image processing program developed at the NIH) [13 ].
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3

Immunohistochemical Analysis of Brain Tumors

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Immunohistochemistry of paraffin embedded, formalin fixed tissue sections of 4 µm thickness was performed. The sections were steamed for 30 minutes in a solution of citrate buffer for antigen retrieval. The primary antibodies were polyclonal rabbit anti-RFP (DsRed, PM005, MBL International), monoclonal rabbit anti-CD3 (ab16669, Abcam), mouse monoclonal anti-dextran FITC (60026Fl, Stemcell Technologies). As secondary antibody we used Cy3 donkey anti-rabbit IgG (711-165-152, Jackson ImmunoResearch Lab). Immunohistochemistry for CD3 and anti-RFP (DsRed) was performed in separate sections. Anti-RFP staining was needed because the tissue fixation and processing quenched the inherent DsRed signal from pmel DsRed T cells. Prussian Blue (Sigma, St. Louis, MO, USA) staining was also used to image iron oxide deposits within the brain tumor tissue. Fluorescence microscopy (Keyence Epi-Fluorescence microscope BZ-X710) was used for imaging.
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4

Immunofluorescence Staining of FFPE Tissue

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5μm sections from FFPE tissue were deparaffinized using a xylene-ethanol gradient, rehydrated, and rinsed in phosphate-buffered saline (PBS). Antigen retrieval was performed by immersion in a modified pH 6.0 citrate buffer for 20 minutes in a steamer. Slides were cooled and rinsed in PBS. Tissue sections or transfected cells were fixed with 1:1 acetone:methanol for 10 minutes at −20°C. Blocking was performed with 10% donkey serum/1% BSA for 1 hour at room temperature. Slides were incubated 1 hour with primary antibody, washed 3 times with 1X PBS, incubated 1 hour with secondary antibody, and again washed 3 times with 1X PBS before mounting with Mowiol/1% n-propyl gallate (Polysciences, Warrington, PA). Primary antibodies: 1:100 rabbit anti-Cx43, 1:100 goat anti-HA, 1:70 mouse anti-GM130 (ab11370, ab9134, ab169276; Abcam, Cambridge, England). Secondary antibodies: 1:10000 Cy3 donkey anti-rabbit IgG, 1:10000 Cy3 donkey anti-goat IgG, 1:200 Cy2 donkey anti-mouse IgG (711-165-152, 711-165-003, 711-225-150; Jackson ImmunoResearch, West Grove, PA).
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5

DCC Expression Quantification after OGD

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Twenty-four hours after OGD, imunofluorescence staining was performed to evaluate the DCC expression. Neurons were washed with PBS for three times and then fixed in 4% paraformaldehyde (pH 7.4) for 15 min. Cells were incubated at 4°C overnight with rabbit anti-DCC antibody (1:20, Abcam, UK). After three washes with PBS, they were further incubated with corresponding secondary antibody, Cy3 donkey anti-rabbit IgG (1:400, Jackson Immunoresearch, USA) at room temperature for 2 h. The nuclei were stained with DAPI (5 μg/ml; Beyotime, USA). Glass slides were viewed under a ZEISS LSM 780 confocal microscope (Carl Zeiss, Germany), and the OD was quantified with ImageJ software as described previously. All trials were repeated three times.
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6

Immunofluorescence Staining Protocol

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Samples were washed three times with 1×PBS and then fixed for 10 min with 4 % paraformaldehyde (PFA) (Merck, Darmstadt, Germany)/1×PBS. After being washed with 1×PBS three times for 10 min each, the samples were treated with a blocking solution (10 % normal donkey serum/1×PBS) (Jackson ImmunoResearch, West Grove, PA, USA) for 1 h at room temperature (RT). The samples were subjected to consecutive treatments with primary and secondary antibodies for 1 h each at RT. The samples were treated with DAPI (4′,6-diamidino-2-phenylindole) (Vector Laboratories, Peterborough, UK) for 5 min after the secondary antibody treatments.
The primary antibodies used in this study are shown in Additional file 1. The secondary antibodies used in this study include an Alexa Fluor 594 goat anti-mouse IgG (1:500), fluorescein isothiocyanate (FITC) donkey anti-mouse IgG (1:500), Cy3 donkey anti-rabbit IgG (1:500), FITC donkey anti-rabbit IgG (1:500), and FITC donkey anti-chicken IgY (1:500) (all from Jackson ImmunoResearch).
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7

Immunofluorescence Imaging of Kidneys

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Kidneys were fixed in 4% PFA overnight at 4 °C, washed with PBS, embedded in paraffin blocks, 5 µm sections were generated and blocked in 10% normal donkey serum in PBS containing 0.3% Triton-X (blocking buffer) at room temperature for 1 h. Primary antibodies used included chick anti-GFP (1:250; Aves Labs), and rabbit anti-phospho-S6 ribosomal protein Ser240/244 (1:500; Cell Signaling Technology, Danvers, MA, USA, Catalog #5364). Slides were incubated with primary antibody in blocking buffer overnight at 4 °C, and washed 3 times in PBS with 0.1% Tween-20 for 20 min at room temperature. After washing, slides were incubated with secondary antibody (Alexa Fluor 488 donkey anti-chicken; 1:250; Jackson ImmunoResearch, Catalog #703-545-155 and Cy3 donkey anti-rabbit IgG; 1:250; Jackson ImmunoResearch) at room temperature for 1 h followed by washing and DAPI staining at 4 °C. Slides were mounted in Prolong Gold Antifade Reagent (Cell Signaling Technology) and imaged with a confocal Nikon A1R inverted microscope with a 20X objective lens using a pinhole of 1.2 μm on all channels at a resolution of 1024 × 1024.
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8

Immunohistochemical Detection of Neuropeptides

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The microtome sections were mounted, deparaffinized, and rehydrated. The slices were then incubated in a moist chamber for 48 h at 4°C with one or two primary antibodies (Anti-Neurophysin 2/NP-AVP mouse IgG, 1:500, Millipore, USA, Anti-OT rabbit IgG, 1:4000, produced by G. Alonso, Montpellier, France) (Alonso et al. 2005 (link)).
After rinsing in PBS, sections were incubated for 1 h at room temperature with the corresponding secondary antibodies conjugated with Cy3 (donkey anti-rabbit IgG, Jackson ImmunoResearchLaboratories, USA, 1:2000) or Alexa Fluor 488 (goat anti-mouse IgG, Invitrogen Molecular Probes, USA, 1:2000). The antibodies were diluted in PBS containing 2% Bovine Serum Albumin (BSA) and 0.1% Triton X-100. After rinsing in PBS, sections were incubated for 30 min in DAPI (1:1000) (4′,6-diamidino-2-phenylindole) a nuclear counterstain for fluorescence microscopy.
Labeled sections were rinsed in PBS, mounted in Mowiol, and observed under Zeiss Axio Imager 2 fluorescence microscope with Apotome (IGF Montpellier, France).
The specificity of the vasopressin, oxytocin and commercial antibodies has been assessed by absorption tests. Additional negative and positive controls were applied. This allowed us to confirm the validity of the staining pattern and to exclude experimental artifacts.
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9

Dual Immunofluorescence Labeling of c-Fos and Kisspeptin

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Sections were washed in TBS, incubated in blocking solution (TBS containing 0.1% Triton X-100, TBS-T, and 5% donkey serum) 2 h at RT, incubated 72 h at 4°C in blocking solution supplemented with c-Fos (1:500; rabbit polyclonal #sc-52, Santa Cruz Biotechnology) and kisspeptin [1:10,000; sheep polyclonal #AC053, generous gift of I. Franceschini (Franceschini et al., 2013 (link))] primary antibodies. Sections were then washed in TBS and incubated in TBS-T supplemented with secondary antibodies (1:500; Cy3 donkey anti-rabbit-IgG and Alexa-488 donkey anti-sheep-IgG, Jackson ImmunoResearch) for 2 h at RT. Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI; 0.5 μg/ml, Sigma-Aldrich) for 2 min. Slides were mounted with FluoromountTM (Sigma-Aldrich).
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10

Multicolor Immunofluorescence Staining

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Frozen sections (5-μm) were fixed with acetone (−20°C) for 10 minutes and dried for 1 hour at room temperature. A Tris-based buffer containing 0.5% casein and 5% normal rat and rabbit serum was used for blocking nonspecific background and for dilution of antibodies. Sections were incubated for 1.5 hours at room temperature with a mixture of a mouse monoclonal antibody specific for Foxp3 (1:100; BioLegend), goat polyclonal antibody specific for CD3 (1:100, Santa Cruz) and rabbit polyclonal antibody specific for c-Met (1:100; Abcam) followed by treatment with Cy3 donkey anti-mouse IgG (1:100; Jackson ImmunoResearch Inc.), Cy3 donkey anti-goat IgG (1:100, Jackson ImmunoResearch Inc.) or Cy3 donkey anti-rabbit IgG (1:100; Jackson ImmunoResearch Inc.) for 1 hour at room temperature. Cell nuclei were stained blue with DAPI. Tissue sections were analyzed by confocal fluorescence microscopy.
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