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16 protocols using formic acid

1

HPLC Separation of Theobromine and Metabolites

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Chromatographic separation was done at 27 °C on an Atlantis dC18 5 µm column (part no. 186001344) fitted to a Waters HPLC unit consisting of a Waters In-Line degasser AF, Waters 1525 binary HPLC pump and Waters 2487 dual wavelength absorbance detector set to monitor at 270 nm. Gradient elution at 1.5 ml/min was by a solvent system of acetonitrile (Sigma-Aldrich; St. Louis, MO) and 0.1% formic acid (BDH, England). The formic acid solution was adjusted to pH 3.75 with ammonia (BDH; Poole, England). Mobile phases were pumped according to the gradient profile in Table 1. Solutions of theobromine, as well as theophylline and caffeine (Sigma-Aldrich; St. Louis, MO) were prepared and used as standards.

Gradient elution profile for separation of theobromine and its metabolites

Time (min)Eluent mix (%)Flow rate (ml/min)
0.1% ammonium formateacetonitrile
09821.5
69551.5
99821.5
109821.5
119281.5
1488121.5
1789111.5
189821.5
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2

Quantification of Methylxanthines in Tea

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Caffeine, theobromine, and theophylline were purchased from Sigma (St. Louis, MO, USA). A total of 30 tea samples of different brands (provided in Table 1) were purchased from local supermarkets (Riyadh, Saudi Arabia) as powder and stored in vacuum packages at a temperature below 0°C. HPLC grade acetonitrile and formic acid were purchased from BDH (Lutterworth, UK). Water used as the mobile phase solvent was prepared using a Millipore system (Milli-Q Advantage Elix, Millipore S.A.S. 67120 Molsheim, France), and then filtered on 0.2 μm nylon membrane filter from Whatman (Maidstone, UK).
Stock solutions of Caffeine, theobromine, and theophylline were 100 μg/mL, and they were prepared by dissolving the standard of each compound with an appropriate amount of water and subsequently stored at 4°C. The working standards were prepared by diluting the concentrated stock standard solutions in water before experiment. A calibration curve was constructed each day before analysis of the samples. HPLC grade water was injected as the blank.
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3

Quantification of Opioid Compounds

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Morphine, Morphine-d3, 6-MAM, 6-monoacetylMorphine-d3 (6-MAM-d3), codeine, codeine-d3, and 6-AC were purchased from Lipomed (Arlesheim, Switzerland). Methanol (HPLC grade), acetonitrile (HPLC grade), ammonium carbonate, formic acid, and ammonium hydroxide were obtained from BDH (Poole, UK). Ammonium formate was obtained from Sigma-Aldrich (Steinheim, Germany). Clean Screen® solid phase extraction (SPE) cartridges (CSDAU203) were obtained from United Chemical Technologies (Bristol, PA, USA).
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4

Analytical Standards for Pharmaceutical Validation

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Primary analytical reference standards with purity ≥ 99% of ciprofloxacin (CPF), trimethoprim (TMP), sulphamethoxazole (SMZ), metronidazole (MTZ), amoxicillin (AMX), clavulanic acid (CLA), flucloxacillin (FCX), cefuroxime (CFX), arthemether (ART), lumefantrine (LUM), mebendazole (MBZ), albendazole (ALB), ferrous ammonium citrate (FAC), vitamin B1 (VB1), vitamin B3 (VB3), vitamin B6 (VB6), folic acid (FLA), griseofulvin (GFV), paracetamol (PCM), and ibuprofen (IBF) were obtained from the Food and Drugs Authority, Ghana. Analytical grade solvents including sodium hydroxide (BDH, UK), formic acid, methanol, chloroform acetic acid, glacial acetic acid (BDH, UK), ethanol, acetonitrile, ammonium hydroxide reagent ACS, sulphuric acid, ethyl acetate, holmium perchlorate, and potassium dihydrogen orthophosphate (BDH, UK) were used.
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5

Quantitative Analysis of Drug Transporters

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Dasatinib (DAS), apigenin (APG), and ibrutinib (IBR), were obtained from Sigma-Aldrich (St. Louis, MI, USA). Acetonitrile, formic acid, methanol, and ammonium acetate were purchased from BDH, Pool (UK) and antibodies anti-P-gp/MDR1/ABCB1, anti-BCRP/ABCG2, Anti-CYP3 A2, and anti-β-actin antibodies were obtained from Santacruz (USA).
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6

Piperaquine Quantification Protocol

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All reagents and chemicals were of analytical grade except where otherwise stated. Piperaquine was obtained from Guangzhou University of Traditional Chinese Medicine (Guangzhou, China). The internal standard (IS) was a stable isotope labeled IS, piperaquine-d6, obtained from Sigma-Tau (Pomezia, Italy). Water, acetonitrile, and methanol were obtained from JT Baker (Phillipsburg, USA). Formic acid (98–100 %), sodium hydroxide (pellets) and triethylamine were obtained from BDH (Poole, UK). Ammonia (25 %), ortho-phosphoric acid (85 %) and perchloric acid (70–72 %) were obtained from Merck (Merck KGaA, Darmstadt, Germany).
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7

Quantifying Angiotensin and Aldosterone

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The aldosterone standard was from Toronto Research Chemical Inc. (Toronto, ON, Canada), and the aldosterone_d7 internal stand (IS) was from IsoSciences (Ambler, PA, United States). Angiotensin I (Ang I), Ang I internal standard (Ang I IS) [DR[V13C,15N]YIHPFHL], and Ang I degradation standard (DS) [DR[V13C,15N]Y[I13C,15N]HPFHL] were from Anaspec (Fremont, CA, United States). Aminoethyl benzene sulfonyl fluoride (AEBSF) hydrochloride was from ACROS Organics (Thermo Fisher Scientific, Branchburg, NJ, United States). Ammonium acetate, maleic acid, and tert-butyl methyl ether (MBTE) were from Sigma Aldrich (St Louis, MI, United States). LCMS grade acetonitrile, methanol, and water were from Thermo Fisher Scientific. Formic acid was from BDH (Radnor, PA, United States). Phosphate buffered saline (PBS) was purchased from Sigma-Aldrich (St. Louis, MO, United States).
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8

Phenolic Compound Extraction and Analysis

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Solvents used for the extraction and analysis were HPLC grade, namely ethanol, formic acid and acetonitrile, purchased from BDH Prolabo (Lutterworth, UK). Distilled water was of Milli-Q quality (Millipore Corp., Bedford, NY, USA). Anhydrous sodium carbonate (≥99.5%) and sodium phosphate (96%) were obtained from Kemika (Zagreb, Croatia), Folin-Ciocalteu reagent from Merck (Darmstadt, Germany), fluorescein sodium salt from Honeywell Riedel-de-Haën (Bucharest, Romania), Trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid) from Acros Organics (Thermo Fisher Scientific, Geel, Belgium) and 2,2′-Azobis (2-amidinopropane) hydrochloride from Sigma-Aldrich (Steinheim, Germany).
Phenolic compounds of authentic standards of caffeic, gallic, ferulic, chlorogenic and p-coumaric acid, quercetin-3-glucoside, kaempferol-3-rutinoside and myricetin were purchased from Sigma–Aldrich (Steinheim, Germany); epicatechin, catechin, epigallocatechin gallate, epicatechin gallate, procyanidin B1, procyanidin B2, apigenin and luteolin from Extrasynthese (Genay, France); and quercetin-3-rutinoside from Acros Organics (Thermo Fisher Scientific, Geel, Belgium).
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9

Quantification of Bioactive Compounds

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The biomarkers (rutin, quercetin, naringenin and gallic acid) were procured from Sigma Aldrich (USA). While AR grade chemicals viz., ethanol, acetonitrile, toluene, ethyl acetate and formic acid were procured from BDH (UK), HPLC grade ethanol and methanol were procured form Merk (Germany). For the analysis of samples and standards, glass-backed silica gel 60F254 RP-18 plate (for RP-HPTLC) and glass-backed silica gel 60F254 plate (for NP-HPTLC) were purchased from Merck (Germany). CAMAG Automatic TLC Sampler-4 (Switzerland) was used to apply the biomarkers and GSEE, band wise to the chromatographic plates and development was accomplished in automatic development chamber (ADC2) (Switzerland). The developed HPTLC Plates were then documented by CAMAG TLC Reprostar 3 and scanned by CAMAG CATS 4 (Switzerland).
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10

Quantitative Proteomics with TMT Labeling

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Iodoacetamide (IAA), tris(2‐carboxyethyl) phosphine hydrochloride (TCEP), triethylammonium hydrogen carbonate buffer 1 M pH 8.5, sodium dodecyl sulfate, and β‐lactoglobulin (LACB) from bovine milk were purchased from Sigma (St. Louis, MO, USA). Formic acid (FA, 99%) and CH3CN were from BDH (VWR International Ltd., Poole, UK). Hydroxylamine solution 50 wt% in H2O (99.999%) was acquired from Aldrich (Milwaukee, WI, USA). H2O (18.2 MΩ cm at 25°C) was obtained from a Milli‐Q apparatus (Millipore, Billerica, MA, USA). Trifluoroacetic acid Uvasol was sourced from Merck Millipore (Billerica, MA, USA). The 6‐plex isobaric tandem mass tags (TMTs) were purchased from Thermo Scientific (Rockford, IL, USA). Sequencing grade modified Lys‐C/trypsin was procured from Promega (Madison, WI, USA). For immuno‐affinity depletion of 14 abundant human proteins, multiple affinity removal system (MARS) columns, Buffer A, and Buffer B were obtained from Agilent Technologies (Wilmington, DE, USA). Oasis HLB cartridges (1cc, 30 mg) were acquired from Waters (Milford, MA, USA) and Strata‐X 33u Polymeric reversed‐phase (RP) and Strata‐X‐C 33u Polymeric strong cation‐exchange (SCX) solid‐phase extraction (SPE) cartridges (30 mg/1 mL) from Phenomenex (Torrance, CA, USA).
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