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6 protocols using alexa fluor 488 conjugated goat anti mouse

1

Modulation of ER Stress Pathways

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The ER stress activators thapsigargin (TG) and tunicamycin (TM) were purchased from Sigma-Aldrich; Merck KGaA and Beijing Solarbio Science & Technology Co., Ltd., respectively. The ER stress inhibitors 4-phenylbutyric acid (PBA) and sodium tauroursodeoxycholate (TUDCA) were purchased from Sigma-Aldrich; Merck KGaA. TM, TG, PBA and TUDCA were dissolved in dimethyl sulfoxide (DMSO; Leagene). Anti-glucose-regulated protein 78 kDa (GRP78; ab12223), anti-activating transcription factor (ATF)6 (ab11909), anti-phosphorylated eukaryotic initiation factor 2α (p-IRE1α; ab48187), anti-E-Cadherin (ab40772), anti-fibronectin (ab2413) and anti-α-SMA (ab32575) primary antibodies were purchased from Abcam. Horseradish peroxidase-conjugated anti-p-eIF2α (119A11), horse anti-mouse and horse anti-rabbit secondary antibodies, Alexa Fluor 488-conjugated goat anti-rabbit and Alexa Fluor 488-conjugated goat anti-mouse secondary antibodies were purchased from Cell Signaling Technology, Inc. Anti-ATF4 primary antibody (sc-390063) was purchased from Santa Cruz Biotechnology, Inc. Primary antibodies against vimentin (10366-1-AP), β-actin (66009-1-Ig) and Neural cadherin (N-cadherin; 22018-1-AP) were purchased from ProteinTech Group, Inc.
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2

Immunofluorescence Analysis of BMP2 and α-SMA in VSMCs

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VSMCs (1x105 cells/ml) were seeded in 24-well climbing slice culture plates treated with 10 mmol/l β-GP for 3 days at 37˚C following plasmid transfection. They were then fixed in 4% paraformaldehyde for 1 h at RT. Following washing with PBS, cells were permeabilized using 0.5% Triton X-100 for 10 min at RT. Next, cells were washed with PBS and blocked with 5% bovine serum albumin (cat. no. A8850-5; Beijing Solarbio Science & Technology Co., Ltd.) for 30 min at RT. The cells were then double-stained with primary antibodies against BMP2 (1:100; cat. no. ab214821; Abcam) and α-SMA (1:100; cat. no. 48938; Cell Signaling Technology, Inc.) in PBS overnight at 4˚C. On day 2, following extensive washing with PBS, cells were incubated with Alexa Fluor 488-conjugated goat anti-mouse (1:200; cat. no. ZF-0511; Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd.) or Alexa Fluor 594-conjugated goat anti-rabbit (1:200; cat. no. ZF-0516; Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd.) for 1 h at RT. Following staining with DAPI for 10 min at 37˚C, cells were viewed by fluorescence microscopy (magnification, x200; Nikon Eclipse NI-E; Nikon Corporation) and analyzed using ImageJ Software (version 1.48; National Institutes of Health).
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3

Immunodetection of HA-Nef and ACOT8 Mutants

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The anti-HA mouse antibody (Covance) was used to detect HA-tagged Nef, while the anti-ACOT8 N-19 goat antibody (Santa Cruz Biotechnologies) was used to detect the expression of ACOT8 mutants. Tubulin was detected using the anti α/β-tubulin antibody (Cell Signaling); the anti-PMP-70 antibody from guinea pig59 (link) was used for peroxisomal staining. HRP-conjugated anti-mouse (Promega), HRP conjugated rabbit anti-sheep (Thermo Scientific) and HRP-conjugated goat anti-rabbit (PerkinElmer) antibodies were used for western blot assay. For immunofluorescence, the Alexa Fluor 488 conjugated goat anti-mouse (Cell Signaling), the Alexa Fluor 594 conjugated donkey anti-goat (Life Technologies) and the Alexa Fluor 555 conjugated goat anti-guinea pig (Life Technologies) antibodies were used.
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4

Immunofluorescence Colocalization Assay

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For IF assays, cells grown in 35 mm glass-bottomed wells were fixed by incubation with 4% fresh formaldehyde in PBS for 20 min, washed with PBS and permeabilized with 0.5% TritonX-100. Cells were then blocked in 10% FBS to prevent nonspecific staining and incubated with anti-Flag (with a dilution of 1 : 500, cat#66008-2-Ig, Proteintech) and N antibodies (1 : 500 dilutions, cat#A18797, Abclonal), followed by Alexa Fluor 488-conjugated goat anti-mouse (with a dilution of 1 : 1000, cat#4408S, Cell Signaling Technology) and Alexa Fluor 555-conjugated goat anti-rabbit (with a dilution of 1 : 1000, cat#4413S, Cell Signaling Technology) antibodies. We used the Colocalization Finder function of Image J software to calculate the PCC of different channels. A threshold of PCC > 0.5 has been stated to indicate a meaningful colocalization.32,33 (link)
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5

Antibody Characterization and Application

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The human 2G12 (EVA3064, Dr. D Katinger)56 (link) and the mouse CA13 (ARP3119, Ms. C Arnold) antibodies were provided by the EU Programme EVA Centre for AIDS Reagents, NIBSC; the L3118 (link), the W6/3257 (link) and the NAMB-1 antibodies58 (link) were kindly provided by Dr. P. Giacomini (Regina Elena Hospital, Rome, Italy); the DT9 antibody17 (link) was a kind gift from A. Fenton-May and P. Borrow (Nuffield Dept. of Clinical Medicine, University of Oxford, UK). The rabbit anti-β2m (ab15976) and the rabbit anti α/β-tubulin (# 2148) antibodies were purchased from Abcam and Cell Signaling, respectively. The mouse anti-flotillin-1 antibody (# 610821) was available from BD Transduction Laboratories. As secondary antibodies, the Alexa Fluor 488 conjugated goat anti-human (Southern Biotech), the phycoerythrin-conjugated anti-mouse (Southern Biotech), the Alexa Fluor 488-conjugated goat anti-mouse (Cell Signaling), the Texas red-labelled sheep anti-rabbit (Abcam) and the HRP-conjugated anti-mouse (Promega) were used.
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6

Investigating Host Signaling Pathways in Porcine Deltacoronavirus Infection

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Antibodies for NF-κB p65 (#6956), p-NF-κB p65 (#3033) and β-Actin (#4970) (Cell Signaling Technology), p-TBK1 (#AF8190) and p-STAT3 (#AF3293) (Affinity Biosciences), STAT3 (#GB12176, Servicebio), HK2 (#22029-1-AP) and IRF3 (#11312-1-AP) (Proteintech Group), p-IRF3 (#MA5-14947, Invitrogen), TBK1 (#ab227182), Goat Anti-Rabbit IgG H&L (HRP) (#ab6721) and Rabbit Anti-Mouse IgG H&L(HRP) (#ab6728) (Abcam) were used for blotting. The anti-PDCoV-N antibodies were prepared in our laboratory. The Alexa Fluor 488-conjugated goat anti-mouse (#4408S) was purchased from Cell Signaling Technology. The STAT3 inhibitor static (#HY-13818) was purchased from Med Chem Express. The selenomethionine (SeMet) (#S3132) was purchased from Sigma. The miR-9-5p mimic, miR-125b-5p-1 mimic, and miR-125b-5p-1 inhibitor were purchased from Gene Pharma.
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