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3 protocols using cell id kit

1

Cell Culture of HNSCC Lines

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HNSCC cell lines UM-SCC-74B (74B) and UM-SCC-22A (22A)20 (link) were kindly provided by Dr. R.H. Brakenhoff and Dr. Gregory Oakley, respectively. 293T cell lines were purchased from ATCC. HNSCC cell lines were authenticated using the Cell ID Kit (Promega, Madison, WI, USA). The short tandem repeat (STR) profiles were compared with the profiles previously described21 (link). All cell lines were cultured in Dulbecco's modified Eagle's medium (DMEM) containing 10% Fetal Bovine Serum (FBS), 100 U/mL penicillin/streptomycin and 2 mmol/L glutamine (Life Technologies) and incubated at 37 °C and 5% CO2 in a humidified atmosphere.
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2

Characterizing SERPINE1 in HNSCC cell lines

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SERPINE1 expression and proliferation, migration and apoptosis assays were performed using six human head and neck squamous cell carcinoma cell lines (UM-SCC-22A, UM-SCC-22B, UM-SCC-74B, SCC9, SCC25 and FaDu). 293T cells were only used to generate lentivirus-containing supernatants.
UM-SCC-22A, UM-SCC-22B, UM-SCC-74B [58 (link)] and 293T (ATCC® CRL-3216™; ATCC;http://www.lgcstandards-atcc.org) cell lines were grown in Dulbecco's modified Eagle's medium (DMEM) containing 10% FBS, 100 U/mL streptomycin / penicillin and 2 mM glutamine (Life Technologies Ltd, UK). SCC-9 (ATCC® CRL-1629™) and SCC-25 (ATCC® CRL-1628™) HNSCC cell lines were grown in DMEM/F12 (1:1) containing 10% FBS, 100 U/mL streptomycin/penicillin, 2 mM glutamine and 0.4 μg/mL of hydrocortisone. FaDu (ATCC® HTB-43™) HNSCC cell line from ATCC was grown in Dulbecco's modified Eagle's medium (DMEM) containing 10% FBS, 100 U/mL streptomycin/penicillin and 2 mM glutamine. All cell lines were cultured in a humidified atmosphere at 37°C and 5% of CO2. Cell lines were authenticated comparing the STR profiles obtained using the Cell ID kit (Promega Corporation, Madison, WI) with the original STR profiles previously described (Supplementary files, table S2) [58 (link), 59 (link)].
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3

Characterization of Ovarian Cancer Cell Lines

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Cell lines (of the serous subgroup) used for the assays were JC and JC- pl [13 (link)], OVCAR-3 and SK-OV-3 (both from the American Type Culture Collection (ATCC)). Normal human skin fibroblasts were provided by the department of Dermatology, LUMC, The Netherlands. The cell lines were grown in RPMI-1640, supplemented with 2 mM L-Glutamine (Gibco, Invitrogen, UK), 10% heat inactivated fetal calf serum (FCS) (Sigma), penicillin (50 units/mL) and streptomycin (50 μg/mL) (Invitrogen, UK). Normal skin fibroblasts were grown in Dulbecco’s modified Eagle medium (DMEM) (Invitrogen, UK), also supplemented with L-Glutamine and 10% FCS. The cultures were maintained in an incubator with humidified atmosphere at 37° C with 9% CO2. The four human ovarian cancer cell lines were tested for their identity profile (ID) using a Cell ID™ kit from Promega. SK-OV-3 and OVCAR-3 were compared to their known profile of the ATCC and JC and JC-pl were cross referenced.
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