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7 protocols using alexa fluor 488 goat anti rabbit igg green

1

Multicolor Immunofluorescence Microscopy

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Cells were grown on 18mm diameter cover glass (Marienfeld). After 48hr incubation, the cells were rinsed twice with 1X PBS and fixed and permeabilized in methanol-acetone mixture (1:1) for 7min at −20°C. Fixed cells were blocked with 5% BSA/PBS-T (PBS, 0.2% Tween-20) for 1hr at room temperature, and then incubated with CSF-1R antibody (1:250 dilution) and TSC-22 antibody (1:500 dilution) for 16hrs at 4°C. The cells were washed three times with 1X PBS for 5min each and incubated with alexa fluor 488 goat anti-rabbit IgG (Green) and alexa fluor 568 goat anti-mouse IgG (Red) antibody (Invitrogen, 250:1 dilution) in darkness for 1hr at room temperature. Finally, the cells were counterstained with 1μg/ml DAPI for 1min at room temperature and mounted on slides. The signals and co-localization were detected using the confocal fluorescence microscopy
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2

Immunofluorescence Analysis of CLU and eIF3f

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Cells were grown on 18mm diameter cover glass (Marienfeld). After 48hr incubation, the cells were rinsed twice with 1X PBS and fixed and permeabilized in methanol-acetone mixture (1:1) for 7min at −20°C. Fixed cells were blocked with 5% BSA/PBS-T (PBS, 0.2% Tween-20) for 1hr at room temperature, and then incubated with CLU polyclonal antibody (1:300 dilution) and eIF3f polyclonal antibody (1:300 dilution) for overnight at 4°C. The cells were washed three times with 1X PBS for 5min each and incubated with alexa fluor 488 goat anti-rabbit IgG (Green) and alexa fluor 568 donkey anti-goat IgG (Red) antibody (Invitrogen, 1000:1 dilution) in darkness for 1hr at room temperature. Finally, the cells were counterstained with 1μg/ml DAPI for 1min at room temperature and mounted on slides. The signals and co-localization were detected using the confocal fluorescene microscopy.
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3

Immunofluorescence Imaging of BRD7 and TSC-22

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Cells were grown on 18 mm diameter cover glass (Paul Marienfeld GmbH & Co.
KG, Lauda-Königshofen, Germany) and transiently transfected with the BRD7
or TSC-22 expression vectors. After 48 h incubation, the cells were rinsed twice
with 1X PBS and fixed and permeabilized in methanol-acetone mixture (1:1) for 7
min at −20°C. Fixed cells were blocked with 5% BSA/PBS-T
(PBS, 0.2% Tween-20) for 1 h at room temperature, and then incubated with
BRD7 polyclonal antibody (1:300 dilution) and TSC-22 polyclonal antibody (1:300
dilution) for overnight at 4°C. The cells were washed three times with 1X
PBS for 5 min each and incubated with alexa fluor 488 goat anti-rabbit IgG
(Green) and alexa fluor 568 donkey anti-goat IgG (Red) antibody (Invitrogen,
Carlsbad, CA, USA, 1,000:1 dilution) in darkness for 1 h at room temperature.
Finally, the cells were counterstained with 1 μg/mL
4’,6-diamidino-2-phenylindole (DAPI) for 1 min at room temperature and
mounted on slides. The signals and co-localization were detected using the
confocal fluorescene microscopy.
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4

Immunofluorescence Localization of MTA1 and TJP1

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5 × 104 cells were seeded on cell slides in 24-well plates. When the cells grew to 60–70% confluent, they were fixed with 4% paraformaldehyde for 20 min and incubated with 0.3% Triton X-100 solution for 20 min. Add 200 μL of rabbit anti-MTA1 and mouse anti-TJP1 (diluted 1:100 with 2% BSA) and incubate overnight at 4 °C. Add 200 μL of Alexa Fluor™ 488 Goat Anti-rabbit IgG (green) and Goat Anti-mouse IgG (red) monoclonal secondary antibody (1:500, Invitrogen, USA), incubated at 37 °C for 40 min. Nuclear counterstaining was performed with 200 μL of DIPA (1:1000 dilution with 1 × PBS). Images were acquired with a laser confocal microscope (ZEISS, Germany) after mounting with anti-fluorescence quenching.
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5

Immunohistochemistry of Kidney Tissue

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Formalin-fixed, paraffin-embedded 2- to 3-micron sections were obtained from renal biopsies in the archives of the University of Michigan Department of Pathology. Human kidney biopsies were dewaxed, rehydrated, and subjected to heat-induced antigen retrieval by incubating in 0.1 M citrate buffer (pH 6.0, ab93678, Abcam) using the 2100 Antigen Retriever. Endogenous peroxidase was blocked with 0.3% hydrogen peroxide (H1009, Sigma) in Tris-buffered saline (TBS, pH 7.4) for 30 min. Sections were blocked with 10% normal goat serum in 5% bovine serum albumin at room temperature for 2 h. Sections were incubated with primary antibodies, Kmal (1:150, PTM-901, PTM Biolabs) or Sirt5 (1:250, PA5-31029, Invitrogen), diluted in Da Vinci Green (PD900L, Biocare Medical) at 4 ˚C overnight. Antibody bindings were detected by using secondary antibody, Alexa Fluor 488 goat anti-rabbit IgG (green, 1:300, A11034) at room temperature for 1 h. The sections were mounted with gold antifade reagent with DAPI (P36931, Invitrogen). An Olympus DP70 Digital Microscope was used to take pictures by ×20 magnification lenses. Fluorescent signal was quantified with ImageJ.
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6

Mcl-1 and γH2AX Immunostaining in PC3 Cells

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Adherent and non-adherent PC3 or PC3/shMcl-1 cells were harvested after a 24 h treatment with 1198, BA, 1198 + BA, or control, applied to slides by smearing, air dried, fixed in formalin for 10 min, permeabilized with 0.1% Triton X-100/PBS for 10 min, rinsed with water, and blocked with goat serum (Vector Laboratories) for 30 min. For DIF, we simultaneously immunostained with rabbit polyclonal Mcl-1 (1/150 dilution) and mouse monoclonal γH2AX (1/200 dilution) for 1 h followed by secondary antibodies Alexa Fluor 488 (green) goat anti-rabbit IgG and Alexa Fluor 594 (red) goat anti-mouse IgG (1/500 dilution; Invitrogen) for 1 h. Mounting medium with DAPI was from Vector Laboratories. Color images were acquired using a Nikon Eclipse 90i fluorescence microscope with FITC/Texas Red filters and merged using Adobe Photoshop 7. A similar DIF experiment was done with PC3/shGFP and PC3/shMcl-1 cells treated with Dox for 4 h.
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7

Immunofluorescence Imaging of PDGF and PDGFR in 3D Cell Cultures

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IHCs were performed on paraffin sections (4–5 μm) of NMF and BJ3Z cells cultured in 3D colonies as described [30 (link)]. They used antibodies directed against PDGF-A (sc-7958; rabbit polyclonal, Santa Cruz), PDGF-B (sc-7878; rabbit polyclonal, Santa Cruz), PDGFR-α (AF1062; goat polyclonal, R&D systems) and PDGFR-β (AF1042; goat polyclonal, R&D systems). Briefly, sections were deparaffinized and antigen retrieval was performed in a pressure cooker (Bio-care Medical) at 20 psi for 5 min in citrate buffer (10 mM sodium citrate, 0.05% Tween-20, pH 6.0). Sections were blocked 30 min with 10% normal goat serum and primary antibodies were applied for 1 hr. Fluorescent secondary antibodies were: Alexa fluor 555 (red) donkey anti-goat IgG (1:300) and Alexa fluor 488 (green) goat anti- rabbit IgG (1:400; both Invitrogen). Cell nuclei were counterstained with 4-6-Diamidino-2-phenylindole (DAPI). Fluorescent images were obtained using a Nikon Eclipse E600 fluorescent microscope coupled to a RGB-MSC micro color camera, and Image Pro Plus software version 4.5 (Media Cybernetics, Silver Spring, MD).
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