The largest database of trusted experimental protocols

9 protocols using sybr primescript rt pcr kit

1

Expression Analysis of PKM2 and miR-338

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted with RNAiso Plus Reagent (TaKaRa), and cDNA was synthesized with a PrimeScript RT Reagent Kit (TaKaRa) according to the manufacturer's instructions. Then, qrt-PCR was performed in triplicate with a CFX-96 Real-Time System (Bio-Rad). Endogenous mRNA levels of PKM2 were determined with a SYBR PrimeScript RT-PCR Kit (Roche) and normalized to those of β-actin as an endogenous control. Quantification of miR-338 was performed with a stem-loop real-time PCR miRNA kit (Ribobio). The qrt-PCR data were analyzed by the 2−△△Ct method. (See Supplementary material for the qrt-PCR primers.)
+ Open protocol
+ Expand
2

RNA Extraction and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA was extracted using TRIzol reagent (TaKaRa, Otsu, Japan). The cDNAs were synthesized with a PrimeScript RT reagent kit (TaKaRa, Otsu, Japan) and were determined using the SYBR PrimeScript RT-PCR Kit (Roche, Roswell, GA, USA) according to manufacturer’s protocols. The quantitative real-time reverse transcription-PCR (qRT-PCR) data were analyzed using the 2−△△Ct method. The primers used in qRT-PCR were listed in Supplementary Table 6. Uncropped scans of these blots are reported in Supplementary Fig. 21.
+ Open protocol
+ Expand
3

Total RNA Extraction and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from WERI-Rb1 cells, RAW264.7 cells and BMSCs was extracted with TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). Total RNA (1 µg) was subjected to reverse transcription using a PrimeScript™ RT Reagent kit (Takara Biotechnology Co., Ltd.), following the manufacturer's protocol. Total RNA from exosomes was extracted with TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) and Dr GenTLE™ Precipitation Carrier (Takara Biotechnology Co., Ltd.). Total RNA (1 µg) was subjected to reverse transcription using a Mir-X™ miRNA First-Strand Synthesis Kit (Takara Biotechnology Co., Ltd.), following the manufacturer's protocol. RT-qPCR was performed with a SYBR Prime Script RT-PCR Kit on a Roche 480 system (Roche Diagnostics) following the manufacturer's protocols. PCR conditions were as follows: 94°C for 5 min, followed by 40 cycles of 94°C for 30 sec, 62°C for 30 sec, and 72°C for 30 sec. The relative target gene expression was quantitated using the 2−ΔΔCq method (25 (link)) and normalized to the endogenous expression of b-actin, GAPDH or miR-16. The primers for mRNA and miRNA detection are listed in Tables SI and SII, respectively.
+ Open protocol
+ Expand
4

Comprehensive RNA Isolation and Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA of cells was isolated using TRIzol Reagent (Invitrogen, CA, USA). The total RNA of exosomes was extracted using TRIzol Reagent (Invitrogen, CA, USA) and Dr. GenTLE™ Precipitation Carrier (Takara, Dalian, China). Then, 1 μg total RNA was added to a mixed reagent for reverse transcription. Reverse transcription for miRNA was performed according to the manufacturer's instructions for the RevertAid First Strand cDNA Synthesis Kit (Invitrogen, CA, USA) or Mir-X™ miRNA First-Strand Synthesis Kit (Takara, Dalian, China). For mRNA, Total RNA was subjected to reverse transcription using a PrimeScript RT Reagent kit (Takara, Dalian, China) following the manufacturer's protocol.
The expression levels of miRNA and mRNA were measured by real-time PCR using SYBR Prime Script RT-PCR Kit on a LightCycler® 480 system (Roche, Switzerland) following the manufacturer's protocol. In brief, the reactions were incubated at 95 °C for 5 min, followed by 45 cycles of 95 °C for 10 s, 60 °C for 10 s, and 72 °C for 10 s. The relative expression levels of miRNA and mRNA were quantified by the 2-ΔΔCT method and normalized using U6 or Actin expression. The primers are shown in Table S1.
+ Open protocol
+ Expand
5

Quantification of MDK mRNA and DNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol reagent (TaKaRa, Otsu, Japan). The cDNAs were synthesized with a PrimeScript RT reagent kit (TaKaRa) according to manufacturer's instructions. The endogenous levels of MDK mRNA and DNA in the p53-precipitated protein/DNA complex were determined using the SYBR PrimeScript RT-PCR Kit (Roche, Roswell, GA, USA). The qRT-PCR data were analyzed using the 2-△△Ct method. PCR primers were designed and synthesized using a primer designing tool (http://www.ncbi.nlm.nih.gov/tools/primer-blast/), and the primer sequences are listed in Table S2.
+ Open protocol
+ Expand
6

Quantitative RT-PCR Analysis of MLKL

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using RNAzol (Molecular Research Center, Inc, USA) agent. It was dissolved in DNase/RNase-free water (Ribobio, Guangzhou, China) and quantified using NanoDrop2000. RNA reverse transcription process was performed following the manufacturer’s instructions (PrimeScript RT reagent Kit, Takara, Japan). RT-PCR was performed using SYBR PrimeScript RT-PCR Kit (Roche, USA) following the manufacturer’s protocol. Each group was duplicated three times in one experiment.
Primer sequences:
MLKL: Forward, 5′- CAACCTGAAGTAACAGCGAGA-3′
Reverse, 3′-GGCTAATGGGGAGATAGAAAA-5′
GAPDH: Forward, 5′-CCCTGTTGCTGTAGCCAAATT-3′
Reverse, 3′-CACCCACTCCTCTACCTTCGA-5′
+ Open protocol
+ Expand
7

Quantitative Analysis of mRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cells using RNAzol reagent (Molecular Research Center, Inc). Reverse transcription was performed using PrimeScript RT reagent kit in accordance with the manufacturer's instructions (TaKaRa, Japan). RT‐qPCR was performed using the SYBR PrimeScript RT‐PCR kit (Roche, USA) following the manufacturer's protocol. The experiment was performed in triplicate. The relative expression levels of mRNA were computed using the 2−ΔΔCt method, where GAPDH was used as an internal control. The primers used in this study are listed in Table S1.
+ Open protocol
+ Expand
8

Quantitative Analysis of PCBP1-AS1 and TRAF5 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from 19 pairs of VSCC and corresponding adjacent normal vulvar tissue specimens or were cultured cells using Trizol reagent (Takara, Tokyo, Japan). RNA was reverse transcribed into cDNA using a PrimeScript™ RT reagent Kit with gDNA Eraser (Takara, Tokyo, Japan). Quantitative RT-PCR was performed using a SYBR® PrimeScriptTM RT-PCR Kit on a Roche LightCycler 480 II real-time PCR platform (Roche, Basel, Switzerland). Gene expression in each sample was normalized to GAPDH expression. The primer sequences used were as follows: for GAPDH, 5'-GCACCGTCAAGGCTGAGAAC-3' (forward) and 5'-TGGTGAAGACGCCAGTGGA-3' (reverse); for PCBP1-AS1, 5'-TGCCAAGAGCCTATCCATTC-3' (forward) and 5'-TCACTCCCTTCACCCTGTCT-3' (reverse); for TRAF5, 5'-AACCTGACCCCAATAGCAGC-3' (forward) and 5'-TCAGTTAAGTCCACGGCCAC-3' (reverse). Real-time PCRs were performed in triplicate. The relative expression levels of PCBP1-AS1 and TRAF5 were calculated using the 2−ΔΔCt value method.
+ Open protocol
+ Expand
9

Real-time qRT-PCR of Inflammatory Cytokines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Real-time quantitative RT-PCR was performed to assess the mRNA expression levels of TNF-α, IL-1β, IL-6, and IL-10 in AR42J cells. The total RNA from the cells was extracted using an RNA Extract Kit and converted to first-strand cDNA according to the manufacturer’s instructions. Quantitative real-time PCR was performed with an SYBR PrimeScriptTM RT-PCR Kit and a LightCycler System (Roche Diagnostics, Lewes, UK). The primer sequences used for PCR were as follows: TNF-α sense 5’-CCAGGAGAAAGTCAGCCTCCT-3’ and antisense 5’-TCATACCAGGGCTTGAGCTCA-3’, resulting in an 87-bp product; IL-1β sense 5’-CACCTCTCAAGCAGAGCACAG-3’ and antisense 5’-GGGTTCCATGGTGAAGTCAAC-3’, resulting in a 79-bp product; IL-6 sense 5’-CTGGTCTTCTGGAGTTCCGTTTC-3’ and antisense 5’-CATAGCACACTAGGTTTGCCGAG-3’, resulting in a 301-bp product; IL-10 sense 5’-GGCTCAGCACTGCTATGTTGCC-3’ and antisense 5’-AGCATGTGGGTCTGGCTGACTG-3’, resulting in a 116-bp product; and β-actin sense 5’-GAACACGGCATTGTAACCAACTGG-3’ and antisense 5’-GGCCACACGCAGCTCATTGTA-3’, resulting in a 77-bp product. Amplification was performed under the following conditions: 95°C for 30 s followed by 40 cycles of denaturation at 95°C for 5 s and annealing at 60°C for 20 s [17 (link)]. All reactions were performed in triplicate.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!