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7 protocols using rk 33

1

Tat, Cocaine, and DDX3 Inhibition in Primary Cortical Cultures

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Primary cortical cultures were treated with recombinant Tat 1–86 (Diatheva, Italy), at concentrations ranging from 5 ng/ml up to 60 ng/ml as described in Figures and Figure legends. The concentrations of Tat had been selected to represent the estimated Tat concentration in the brain of HIV-infected patients (Xiao et al. 2000 (link)). Cocaine-HCl was obtained from Sigma Chemicals and was dissolved in sterile water immediately before the addition to cell cultures. Cocaine concentrations ranged from 10 μM up to 1000 μM as described in Figures. The concentration of cocaine is in a range of the brain cocaine concentration estimated for recreational users based on animal studies (Zimmer et al. 2011 (link)) and postmortem examination of the brain tissues in fatal cases of cocaine abuse (Spiehler and Reed 1985 (link)). RK-33, a small molecule inhibitor of DDX3, was obtained from Selleck Chemicals, (Catalog No.S8246, Selleck Chemicals, Houston, Texas). A stock solution of RK-33 was prepared in DMSO (5 mM) and was diluted to final concentrations from 0.25 μM up to 12 μM.
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2

Regulation of Fibroblast Activation by DDX3 and TGF-β1

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HLFs were transfected with DDX3 siRNA (4392420, Thermo Fisher Scientific) or negative control siRNA (4390843, Thermo Fisher Scientific), following the manufacturer’s instructions. After 24 hours, the transfection medium was removed, and HLFs were treated with or without 10 ng/mL TGF-β1 in no serum–added DMEM. After an additional 48 hours, the culture medium was discarded, and cells were lysed in RIPA buffer with PPI cocktail. Samples were analyzed by Coomassie blue staining and Western blotting. Additionally, HLFs were treated with 1 or 10 μM RK-33 (Selleck Chemicals), or 1 or 10 μM IN-1 (AdooQ) from a 10 mM stock in DMSO (VWR) or DMSO diluent control, in the presence or absence of 10 ng/mL TGF-β1. After an additional 48 hours, the culture medium was discarded, and cells were lysed in RIPA buffer with PPI cocktail. Samples were analyzed by Coomassie blue staining and Western blotting.
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3

Preparation of Small Molecule Compounds

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RK-33 (Cas No. 1070773–09-9) was purchased from Selleck Chemicals (S8246, Houston, Texas). A stock solution of RK-33 was prepared in 5 mM DMSO (Millipore Sigma, D8418) and was diluted to final concentration of 6 μM. 16D (CAS No. 1919828–83-3) was kindly provided by Drs. Giovanni Maga and Maurizio Botta (Institute of Molecular Genetics IGM-CNR “Luigi Luca Cavalli-Sforza”, National Research Council, via Abbiategrasso 207, I-27100 Pavia (Italy)). A 1 mM stock solution of 16D was prepared in DMSO and was diluted to the final concentration of 48 µM. Sodium arsenite, referred to as arsenite for simplicity, was purchased from Millipore Signa (S7400). A 0.05 M stock solution of arsenite was prepared in water and was diluted to final concentration of 0.5 mM.
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4

Inhibition of MEK and DDX3 Signaling

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PD98059 (Selleck, Houston, Texas, USA), which is a ligand of aryl hydrocarbon receptor (AHR) and functions as an antagonist, was used as a specific inhibitor of MEK 25 . RK33 (Selleck, Houston, Texas, USA), which inhibits DDX3 helicase activity 26 (link), was used as a specific inhibitor of DDX3.
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5

Culturing Rat Embryonic Ventricular Myoblasts

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Rat embryonic ventricular myoblastic H9c2 cells were bought from the National Collection of Authenticated Cell Culture (https://cellbank.org.cn), were cultured with DMEM (Cat. No. 12800017, Gibco) supplemented with 10% fetal bovine serum (No. 04‐001‐1ACS, Biological Industries), 1.5 g/L NaHCO3 (Cat. No. A500873), and 1% Penicillin‐Streptomycin liquid (Cat. No. P1400) in a humidified atmosphere of 95% air and 5% CO2 at 37℃. Dox was obtained from MedChemExpress (Cat. No. HY‐15142) and used at the concentration of 2 μM.[19] RK‐33 was purchased from Selleck.cn (Cat. No. S8246) and used at the concentration of 7.5 μM. LiCl was bought from Solarbio (Cat. No. C8380) and used at the concentration of 20 mM.
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6

Reactivation of Latent HIV-1 Proviruses

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Jurkat cells and J-Lat 11.1 cells (Jurkat cells containing integrated full-length HIV-1 genome mutated in env gene and GFP replacing nef)39 (link) were maintained in RPMI-1640 medium (Sigma-Aldrich) supplemented with 7% FBS and 100 μg/ml penicillin-streptomycin at 37 °C in a humidified, 5% CO2 atmosphere. J-Lat latent proviruses were reactivated by adding 10 µM of phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich) to the culture media for 18 h. Primary CD4+ T cells were isolated from buffy coats from healthy donors by Ficoll gradient followed by separation via negative selection with RosetteSep Human CD4+ T-cell Enrichment Kit (StemCells Technologies) according to the manufacturer’s instructions. After isolation, CD4+ T cells were maintained in RPMI-1640 medium (Sigma-Aldrich) supplemented with 10% FBS and 100 μg/ml penicillin-streptomycin at 37 °C in a humidified, 5% CO2 atmosphere. Cells were activated with 100 ng/ml PMA and 1 µg/ml Ionomycin (Sigma-Aldrich). HEK293T cells were cultured in DMEM medium (Sigma-Aldrich) supplemented with 10% FBS and 100 μg/ml penicillin-streptomycin at 37 °C in a humidified, 5% CO2 atmosphere. RK-33 (SelleckChem) was used at a concentration of 2 µM unless indicated otherwise. FH-1321 was provided by First Health Pharmaceuticals and used at concentrations of 1 µM. YM155 (SelleckChem) was used at concentrations of 200 nM.
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7

Antibody Procurement and Preparation

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Anti-RPL13, anti-DDX3, and anti-G3BP1 monoclonal antibodies were purchased from Abcam (Cambridge, MA, USA). Anti-green fluorescent protein (GFP), anti-FLAG, and anti-β-actin monoclonal antibodies were purchased from Santa Cruz Biotechnology (CA, USA). Anti-hemagglutinin (HA) monoclonal antibody was purchased from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase (HRP)-labeled secondary antibodies were purchased from Sigma-Aldrich (St. Louis, MO, USA). Polyclonal pig antiserum directed against FMDV was prepared and stored in our laboratory. Lipofectamine LTX Reagent for the transfection of recombinant plasmids and Lipofectamine RNAiMax Reagent for the transfection of siRNA were purchased from Invitrogen (CA, USA). The QuikChange Site-Directed Mutagenesis Kit was purchased from Agilent Technologies (CA, USA). RNA was extracted with TRIzol Reagent, purchased from Invitrogen (CA, United States). The specific inhibitors of helicase DDX3, RK-33 and ketorolac salt, were purchased from Selleck Chemicals (Houston, TX, USA).
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