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5 protocols using cd117 fitc

1

Profiling Immune Cell Transcriptomes

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Cells were sorted from 2-3 pooled donors for each replicate as described (Annunziato et al., 2007 (link); Cella et al., 2010 (link); Fuchs et al., 2013 (link)). RNA was isolated (RNeasy Plus Micro Kit, Qiagen), amplified, and hybridized to the Affymetrix Human Gene 1.0 ST arrays. RNA yields from each subset were comparable. Array data were analyzed as described (Robinette et al., 2015 (link)). Unsupervised clustering was performed in R using the hclust function. For CD300LF analyses, CD56–enriched tonsil cells were stained with a PercP-Cy5.5 lineage cocktail containing anti-CD3 (eBioscience), -CD19 (eBioscience), -CD34 (Biolegend) and -ILT3 (Biolegend). Cells were stained with the following combination of antibodies (Biolegend unless indicated): CD117-FITC; NKp44-PE (BD-Pharmingen); CD300f-eFluor660 (eBioscience); CD196-BV421; CD103-BV605; CD161-BV510; CD56-PE-Cy7 (BD-Pharmingen); CD127-biotin (eBioscience), followed by Streptavidin-APC-eFluor780. Data were acquired on an LSR-Fortessa (BD) and analyzed by FlowJo software (TreeStar).
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2

Murine Mast Cell Differentiation Protocol

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Bone marrow stem cells were extracted from femurs of 6–8-week-old C57BL6 mice and cultured in Dulbecco’s modified Eagle’s medium Glutamax medium, supplemented with 10% FBS, 50 IU penicillin, 50 ug/ml streptomycin and IL-3 for 6 weeks as described.49 (link) IL-3-enriched medium was sourced from murine WEHI-3 myelomonocytic leukaemia cultures and added to growth medium at 20%v/v.50 (link) MC differentiation was verified by cell surface staining with CD117-FITC (fluorescein isothiocyanate; 1:300) and FcεR1α-PE (1:300; BD Biosciences, San Jose, CA, USA). Stained cells were analysed on a LSR-II flow cytometer using the FacsDiva software (BD Biosciences).
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3

Immunophenotyping of Leukemia Cell Lines

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For in vitro experiments, NB4, NB4-R2, NB4-ATOr, and NB4 clone 21 cells were collected 72 h after drug treatment, washed, and resuspended in 100 μL PBS and incubated with CD11b-PE (#347557, clone: D12), CD11c-APC (#559877, clone: B-ly6), CD15 (#562371, clone: 7C3.rMAb), and CD16 (#557758, clone: 3G8) (BD Biosciences). Cells obtained from BM, or the spleen of leukemia model mice were labeled with antibodies against CD11b-PE (#553311, clone: M1/70), CD117-FITC (#561680, clone: 2B8), Gr1-FITC (#551460, clone: 1A8; all from BD Biosciences), then collected and washed and resuspended in PBS. The percentage of positive cells and MFI were determined by flow cytometry.
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4

Multicolor Flow Cytometry Panel

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Antibodies used for flow cytometry are listed in this order: antigen fluorophore (catalog number). CD170 PE (552126), CD117 FITC (553354), and KLRG1 PE-CF594 (565393) were from BD Bioscience. CD16/32 (Fc block 14-0161-85), viability ef506 (65-0866-14), MHC-II AF700 (56-5321-80), CD62L APC (17-0621-83), CD4 AF700 (56-0041-81), CD8 ef450 (48-0081-82), and TCR gamma/delta Super Bright 780 (78-5711-80) were from Invitrogen. CD11b PE-Dazzle594 (101256), CD49b PECy7 (103518), CD11c APC (117310), F4/80 APC-Cy7 (123118), Ly6G Pacific Blue (127612), CD19 FITC (101505), CD127 PerCp-Cy5.5 (135022), TCR-β PE-Cy7 (109222), and CD44 APC-Cy7 (103028) were from BioLegend. Antibodies were used in accordance with the manufacturer’s guidelines or at 1 to 2 μg/ml.
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5

Multiparametric Characterization of MSCs

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The prevalence of MSC-specific surface antigens was determined by flow cytometry. Total 1 × 104 cells at passage 3 were harvested and resuspended in 500 μL staining buffer (SB; PBS containing 1% FBS) and incubated in the dark for 30 min at 4°C with 20 μg/mL (n = 5). Then, the cells were stained with the following specific antihuman antibodies: CD24-FITC, CD-29-PE, CD34-PE, CD44-FITC, CD45-FITC, CD73-PE, CD90-PE, CD105-FITC, CD117-FITC, CD146-PE, CD147-PE, and OCT-4 (BD Pharmingen). Immunoglobulin IgG-FITC and IgG-PE conjugated isotype control antibodies were used to determine background fluorescence. Data were analyzed using a FACSCalibur analytical fluorescence-activated cell sorter.
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