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12 protocols using anti pro caspase 1

1

Western Blot Analysis of Inflammasome Proteins

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Proteins were separated from cells or tissues using RIPA buffer (EMD Millipore, Billerica, MA, USA). Then, protein concentrations were determined using a bicinchoninic acid (BCA) protein assay kit (Thermo Fisher). The same concentration of samples was separated by 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS–PAGE) and then transferred to polyvinylidene fluoride (PVDF) membranes (Bio–Rad Laboratories Inc., Hercules, CA, USA). Next, membranes were blocked with 5% non-fat dry milk at room temperature for 2 h. Then, they were incubated at 4℃ for 24 h with the following primary antibodies: anti-NLRP3 (1:500, Abcam, Cambridge, MA, USA), anti-pro-caspase-1 (1:1,000, Abcam), anti-cleaved-caspase-1 (1:500, Adipogen, San Diego, California, USA), anti-GSDMD-FL (1:500, Abcam), anti-GSDMD-N (1:500, Abcam), anti-Ngb (1:500, Abcam), and anti-GAPDH (1:1,000, Abcam). At room temperature, the membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies for 2 h. An enhanced chemiluminescence (ECL) kit (Bio–Rad, USA) was used to image the protein bands.
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2

Immunoblot Analysis of Inflammasome Proteins

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The following antibodies were used for immunoblot: anti-β-actin, anti-ASC, anti-HO-1, anti-HO-2, anti-ATF4, and anti-CHOP antibodies were purchased from Cell Signaling Technology. Anti-NLRP1, anti-NLRP3, anti-NLRC4, anti-AIM2, and anti-pro-caspase-1 antibodies were purchased from Abcam. Anti-caspase-1 antibody (against both pro-caspase-1 and p20) was purchased from Santa Cruz Biotechnology. Anti-IL-1β (against both pro-IL-1β and mature IL-1β) was purchased from Novus Biologicals.
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3

Western Blot Analysis of Protein Expression

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The brain tissues of mice and cells were homogenized in lysis buffer containing protease inhibitors. The homogenate was centrifuged at 14000 g for 15 min at 4°C and the protein concentration was determined using the BCA kit. 30 μg lysate was loaded onto 10% SDS-PAGE. The proteins were transferred to PVDF membranes (Millipore, MA, USA). The membranes were blocked for 1 h in 5% dry milk and then incubated overnight with one of the following primary antibodies: anti-iNOS (ab178945), anti-Pro-caspase-1 (ab179515), anti-ANT (ab102032), anti-Cyp D (ab16045) (Abcam, Cambridge, MA, USA), anti-TH (#2792), anti-COX2 (#12282), anti-p-p65 (#3033), anti-Cleaved-caspase-1 (#89332), anti-Cyto C (#4280), anti-VDAC (#4866), anti-COX4 (#4850), or anti-β-actin (#3700) (Cell Signaling Technology, Beverly, USA). After washing 3 times in TBST for 5 min each, the membranes were incubated with goat anti-mouse, anti-rabbit, or anti-rat HRP for 1 h at room temperature. Then, the membranes were washed 3 times in TBST for 5 min each. The signal was visualized using an ECL chemiluminescence kit (Amersham Biosciences/GE Healthcare; Piscataway, NJ).
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4

Western Blot Analysis of Apoptotic Pathway Proteins

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The protein extracts from the cortex and cultured astrocytes were homogenized in 250 mg tissue/0.5 ml cold lysis buffer (see above). Then they were kept on ice for 30 min, centrifuged at maximum speed for 15 min, and the supernatant was collected to determine the proteins levels using the Bradford Assay (Bio-Rad, Hercules, CA, USA). Lysates were separated by SDS-PAGE gels and were transferred to PVDF membranes following standard techniques. Membranes were blocked with 5% non-fat dried milk in TBS containing 0.1% Tween-20 (TBS-T). Next they were then incubated overnight with the following primary antibodies: anti-NLRP3 (1 μg/ml, Abcam), anti-caspase-1 (1/100, Santa Cruz Biotechnology); anti-pro-caspase-1 (1/200, Abcam); anti-Apaf-1 (1 μg/ml, Millipore Bioscience Research Reagents); anti-caspase-3 (1:500) and anti-caspase-9 (1:1000, Cell Signaling).
Some membranes were stripped for 1 h at 60°C in an SDS solution (2% SDS, 0.85% 2-ME, and 65 mM Tris-HCl, pH 6.8, and were washed and incubated with anti-GAPDH (1/3000, Chemicon) for 2 h as a loading control. The intensity of the bands was quantified with the image analysis program, α-Ease FC, version α Imager 2200 (Alpha Innotech Corporation).
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5

Protein Expression Analysis in Cell Lysates

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Cells were prepared in 12-well plates and treated as described above. After incubation as indicated, supernatants were collected and concentrated using 20% (w/v) trichloroacetate, and the cells were lysed with 1 × SDS loading buffer (Beyotime, China) and then cell lysates were collected. Subsequently, concentrated supernatants and cell lysates were subjected to 12% SDS-PAGE and then transferred onto a polyvinylidene difluoride (PVDF) membrane by electroblotting. Next, the membranes were blocked with 5% nonfat dry milk and then immunoblotted with the indicated antibodies (Abs) including anti-IL-1β (R&D, USA), anti-caspase-1 p20 (AdipoGen, USA), anti-pro-IL-1β, anti-pro-caspase-1, anti-NEK7 (Abcam, Cambridge, UK) and anti-β-actin (Beyotime, Beijing, China). Finally, the distinct protein bands were detected by ECL detection reagent (Biosharp, China).
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6

Immunoblotting of Apoptosis Regulators

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Proteins were extracted using Lysis Buffer (Tris-HCl 50 mM, NaCl 150 mM, EDTA 5 mM and Triton-X100 1%) and Cocktail Protease Inhibidor (04693159001, Roche). 14% polyacrilamide gelswere transferred to PVDF membrane using a semi-dry system. The membrane was blocked for 1 hour and incubated overnight at 4 °C with the primary antibody (Anti-pro-caspase-1, Gasdermin D, pro-IL-1β and ASC; Abcam). The membrane was then incubated for 1 hour with secondary antibody (Jacksons Immuno Research). The anti-β-actin antibody (Aldrich) was used as loading control. The bands were revealed using Chemiluminescent Substrate (Westar Supernova XLS3L and XLS3P) by Image Quant LAS 4000 (GE Healthcare Life Sciences). The bands were analyzed with the ImageJ software (Version 1.8) for densitometry analysis.
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7

Western Blotting Protocol for Protein Analysis

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Western blot was described as described previously [23 (link)]. After rinsing the cells treated under indicated conditions with pre-chilled PBS solution, the cell pellets were resuspended in RIPA lysis buffer for 30 min for the extraction of total protein. Protein concentration was measured using a BCA protein Assay Kit (Beyotime Biotechnology, Jiangsu, China). Next, electrophoresis was performed to resolve the proteins with 10% SDS-PAGE at 120 V until the bromophenol blue dye front reached the separation adhesive base. The proteins were then transferred on to PVDF membranes (Millipore Sigma., MA, USA) in an icebox at 100 V for 1.5 h. The membranes were then blocked in blocking buffer for 1 h at 4°C. After washing with TBST solution, the membranes were incubated with primary antibodies including anti-pro-Caspase 1, anti-cleaved (CL)- Caspase 1, anti-GSDMD (1:1000; Abcam., MA, USA), and anti-GAPDH (1:3000, Leading Biology Inc., CA, USA) on a rocker at 4°C overnight followed by incubation with appropriate secondary antibodies (1:2000, MultiSciences, Shanghai, China) at room temperature for 2 h. Finally, the protein bands were visualized using an ECL detection system (Thermo Fisher Scientific, Inc., MA, USA).
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8

Western Blot Analysis of Inflammasome Proteins

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Cells were collected and lysed using protein lysis buffer containing a protease inhibitor cocktail (Millipore). Total proteins were separated by SDS–PAGE and then transferred to polyvinylidene difluoride membranes. Nonspecific binding was blocked with 5% nonfat milk at room temperature for 2 h. The membranes were incubated with the following primary antibodies overnight at 4 °C: anti-GSDMD (Cell Signaling Technology, 1:1,000, catalog no. 96458S), anti-NLRP3 (Cell Signaling Technology, 1:1,000, catalog no. 15101S), anti-TMS1/ASC (Abcam, 1:1,000, catalog no. ab151700), anti-pro-caspase 1 + p10 + p12 (Abcam, 1:1,000, catalog no. ab179515), α-actinin (Abcam, 1:3,000, catalog no. ab68194) and β-actin (Abcam, 1:3,000, catalog no. ab6276). The membranes were incubated with appropriate secondary antibodies (1:2,000). Relative intensities were quantified using Image Lab (Bio-Rad) using enhanced chemiluminescence (Millipore).
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9

Inflammasome Protein Expression Analysis

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Expression levels of pro‐caspase‐1, cleaved caspase‐1, YAF2, NLRP1 and adaptor apoptosis‐associated speck‐like (ASC) were determined using Western blot. Collected SH‐SY5Y cells were washed with 0.01 M PBS solution for twice. Then, the cells were broken using RIPA lysis solution (Solarbio) for protein extraction. Next, 20 μg of proteins for each group were separated on 12% SDS‐PAGE gels for 2.5 h, and were transferred into polyvinylidene fluoride membranes. After that, membranes were blocked with 5% fresh nonfat milk for 1 h followed by incubation with primary antibodies overnight at 4°C. The anti‐pro‐caspase‐1, anti‐ASC, anti‐NLRP1, anti‐ anti‐cleaved caspase‐1, and anti‐β‐actin (internal reference) antibodies were purchased from Abcam. All primary antibodies were diluted at a ratio of 1:2000 when used. Next day, membranes were maintained with secondary antibodies for 1 h at room temperature. Finally, an ECL kit was utilized to analyze protein bands.
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10

Cytokine and Inflammasome Regulation

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The productions of interleukin 1 (IL-1β) and interleukin 6 (IL-6) were determined by the enzyme-linked immunosorbent serologic assay (ELISA) using commercially available kits (GBD) according to the manufacturer's instructions, after indicated treatments.
Western blotting was used to detect caspase-1, NLRP3, and NF-κB expressions. Briefly, the total cellular protein was extracted and separated by SDS-PAGE. SDS-PAGE was blotted to the PVDF membrane and incubated with anti-caspase-1 P20 (1 : 700; Abcam), anti-NF-κB (1 : 400; Abcam), anti-NLRP3 (1 : 600; Santa Cruz), anti-P-IκB-α (1 : 1000, Cell Signaling Technology), anti-procaspase-1 (1 : 800; Abcam), anti-cleaved IL-1β (1 : 700, Santa Cruz), and anti-IL-1β (full length) (1 : 1000, Abcam). The membranes were then incubated with the horseradish peroxidase-labeled secondary antibody, which was exposed to ECL color development reagents. The membranes were developed using the ChemiDoc-It™ TS2 Imaging System (Bio-Rad), and the relative optical density was analyzed using the ImageJ2x software (National Institute of Health, Bethesda, MD, USA).
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