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4 protocols using inpp4b

1

Immunoblotting for Signal Pathway Proteins

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Tumors and cells were lysed in RIPA lysis buffer with protease inhibitors (Roche) and phosphatase inhibitors (Sigma). Equal amount of total protein lysates were used for immunoblotting. The following antibodies were from Cell Signaling Technology (Beverly, MA) and were used at 1:1000 dilution: pAKT (#3787), AKT (#4691), pERK (#4370), ERK (#4695), pMET (#3077), MET (#3127), pEGFR (#3777), EGFR (#4267), pPRAS40 (#2997), PRAS40 (#2691), Vinculin (#13901). Other antibodies used in this paper are as follows: INPP4B (Abcam, Ab81269), beta-actin (Sigma, A2228).
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2

Molecular Biomarkers in Breast Cancer

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BCa cells were lysed for Western blotting and proteins were detected using the antibodies, GAPDH (Santa Cruz 32233), P-Ser473 AKT (Cell Signaling 4060), INPP4B (Santa Cruz 12318), Total AKT (Cell Signaling 9272), ERα (produced in our lab, SC1-1), and p27 (Santa Cruz 528). Tissue fixation and sectioning were processed as previously described [36 (link), 73 (link)]. Tissue sections were incubated with ERα antibodies (Santa Cruz, MC-20), P-Ser473 AKT (Cell Signaling 4060), INPP4B (Abcam EPR3108), Ki67 (Novocastra).
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3

Immunofluorescence Staining of Neuronal Markers

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Cells were fixed at indicated time in 4% paraformaldehyde for 10 min and permeabilized with 0.1% Triton X-100 for 5 min at room temperature. For staining with anti-PI(3,4)P2 antibody, cells were permeabilized with 0.5% saponin (Sigma) for 15 min. After washing with PBS, the cells were blocked with 5% donkey serum in PBS for 1 h and incubated with primary antibody against GFP (Abcam, USA; 1:1000), Tau-1 (Millipore; 1:200), MAP2 (Millipore; 1:2000), INPP4B (Abcam; 1:50), and PI(3,4) P2 (Echelon, 1:200) overnight in 4°C. Appropriate secondary antibodies were incubated for 45 min at room temperature, and specimens were prepared as described in Immunohistochemistry. To label polymerized actin (F-actin), phalloidin-conjugated Alexa Fluor 647 (Invitrogen) were incubated together with secondary antibodies.
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4

Standardized INPP4B Immunohistochemistry

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We provided the tissue samples, and tissue microarray (TMA) manufacturing was done by Shanghai Biochip Company, Ltd., Shanghai, China. Briefly, the immunohistochemistry (IHC) process consisted of the following steps: baking, deparaffinization, antigen retrieval, quenching the endogenous peroxidase activity, blocking nonspecific staining, and incubation with the primary antibody (INPP4B, 1:50, Abcam) and the secondary antibody. The immunoreactivity score (IRS) was defined by “cell staining percentage×staining intensity”. The specimens were defined as negative (IRS =0~2) and positive (IRS=3~9). The detailed immunohistochemical process and staining evaluation were performed as previously described 20 (link).
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